pdf protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Score

pdf

Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family. (236 aa)

Predicted Functional Partners:

mtfmt

0.911

cdca8

0.771

mrrf

0.726

metap1

0.710

mrpl21

0.676

mrpl20

0.665

metap1d

0.641

mrps6

0.619

mrps16

0.609

mrpl27

0.597

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cdca8	mrpl20	ENSCMIP00000046398	ENSCMIP00000034801	Nbl1_Borealin_N domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	0.469
cdca8	pdf	ENSCMIP00000046398	ENSCMIP00000001613	Nbl1_Borealin_N domain-containing protein.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.	0.771
metap1	metap1d	ENSCMIP00000015818	ENSCMIP00000027411	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.708
metap1	mrpl20	ENSCMIP00000015818	ENSCMIP00000034801	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	0.402
metap1	mrpl21	ENSCMIP00000015818	ENSCMIP00000017856	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Uncharacterized protein.	0.468
metap1	mrps6	ENSCMIP00000015818	ENSCMIP00000038846	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Uncharacterized protein.	0.446
metap1	pdf	ENSCMIP00000015818	ENSCMIP00000001613	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.	0.710
metap1d	metap1	ENSCMIP00000027411	ENSCMIP00000015818	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.708
metap1d	mtfmt	ENSCMIP00000027411	ENSCMIP00000046223	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Uncharacterized protein.	0.501
metap1d	pdf	ENSCMIP00000027411	ENSCMIP00000001613	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.	0.641
mrpl20	cdca8	ENSCMIP00000034801	ENSCMIP00000046398	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	Nbl1_Borealin_N domain-containing protein.	0.469
mrpl20	metap1	ENSCMIP00000034801	ENSCMIP00000015818	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.402
mrpl20	mrpl21	ENSCMIP00000034801	ENSCMIP00000017856	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	Uncharacterized protein.	0.996
mrpl20	mrpl27	ENSCMIP00000034801	ENSCMIP00000000271	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	Uncharacterized protein.	0.992
mrpl20	mrps16	ENSCMIP00000034801	ENSCMIP00000014945	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	Uncharacterized protein.	0.990
mrpl20	mrps6	ENSCMIP00000034801	ENSCMIP00000038846	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	Uncharacterized protein.	0.976
mrpl20	mrrf	ENSCMIP00000034801	ENSCMIP00000033360	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	RRF domain-containing protein.	0.898
mrpl20	pdf	ENSCMIP00000034801	ENSCMIP00000001613	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins; Belongs to the polypeptide deformylase family.	0.665
mrpl21	metap1	ENSCMIP00000017856	ENSCMIP00000015818	Uncharacterized protein.	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.468
mrpl21	mrpl20	ENSCMIP00000017856	ENSCMIP00000034801	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	0.996

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