marchf6 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

marchf6

RING-CH-type domain-containing protein. (950 aa)

Predicted Functional Partners:

Ube2g2

0.983

sqle

0.978

ube2j2

0.939

cnot2

0.854

c1qtnf12

0.844

ENSCMIP00000007771

0.798

syvn1

0.798

amfr

0.798

ufd1

0.787

ubr2

0.767

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000007771	Ube2g2	ENSCMIP00000007771	ENSCMIP00000012151	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.847
ENSCMIP00000007771	cnot2	ENSCMIP00000007771	ENSCMIP00000047943	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.431
ENSCMIP00000007771	marchf6	ENSCMIP00000007771	ENSCMIP00000001647	Uncharacterized protein.	RING-CH-type domain-containing protein.	0.798
ENSCMIP00000007771	ubr2	ENSCMIP00000007771	ENSCMIP00000011437	Uncharacterized protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.450
ENSCMIP00000007771	ufd1	ENSCMIP00000007771	ENSCMIP00000033040	Uncharacterized protein.	Ubiquitin fusion degradation protein 1-like protein.	0.730
Ube2g2	ENSCMIP00000007771	ENSCMIP00000012151	ENSCMIP00000007771	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.847
Ube2g2	amfr	ENSCMIP00000012151	ENSCMIP00000011689	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.847
Ube2g2	c1qtnf12	ENSCMIP00000012151	ENSCMIP00000034793	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	C1q domain-containing protein.	0.876
Ube2g2	cnot2	ENSCMIP00000012151	ENSCMIP00000047943	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	NOT2_3_5 domain-containing protein.	0.834
Ube2g2	marchf6	ENSCMIP00000012151	ENSCMIP00000001647	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RING-CH-type domain-containing protein.	0.983
Ube2g2	syvn1	ENSCMIP00000012151	ENSCMIP00000007784	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.847
Ube2g2	ube2j2	ENSCMIP00000012151	ENSCMIP00000034775	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2, J2.	0.916
Ube2g2	ufd1	ENSCMIP00000012151	ENSCMIP00000033040	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin fusion degradation protein 1-like protein.	0.603
amfr	Ube2g2	ENSCMIP00000011689	ENSCMIP00000012151	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.847
amfr	cnot2	ENSCMIP00000011689	ENSCMIP00000047943	Uncharacterized protein.	NOT2_3_5 domain-containing protein.	0.431
amfr	marchf6	ENSCMIP00000011689	ENSCMIP00000001647	Uncharacterized protein.	RING-CH-type domain-containing protein.	0.798
amfr	ubr2	ENSCMIP00000011689	ENSCMIP00000011437	Uncharacterized protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.450
amfr	ufd1	ENSCMIP00000011689	ENSCMIP00000033040	Uncharacterized protein.	Ubiquitin fusion degradation protein 1-like protein.	0.730
c1qtnf12	Ube2g2	ENSCMIP00000034793	ENSCMIP00000012151	C1q domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.876
c1qtnf12	marchf6	ENSCMIP00000034793	ENSCMIP00000001647	C1q domain-containing protein.	RING-CH-type domain-containing protein.	0.844