sting1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

sting1

Uncharacterized protein. (378 aa)

Predicted Functional Partners:

tbk1

0.996

ikbke

0.995

ddx41

0.983

LOC103173936

0.979

ENSCMIP00000010419

0.979

rps27a

0.830

zdhhc1

0.805

LOC103176229

0.805

ENSCMIP00000027439

0.797

LOC103189418

0.797

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000010419	ddx41	ENSCMIP00000010419	ENSCMIP00000043646	IRF tryptophan pentad repeat domain-containing protein.	Uncharacterized protein.	0.682
ENSCMIP00000010419	ikbke	ENSCMIP00000010419	ENSCMIP00000031776	IRF tryptophan pentad repeat domain-containing protein.	Protein kinase domain-containing protein.	0.910
ENSCMIP00000010419	rps27a	ENSCMIP00000010419	ENSCMIP00000006356	IRF tryptophan pentad repeat domain-containing protein.	Ubiquitin-like domain-containing protein.	0.409
ENSCMIP00000010419	sting1	ENSCMIP00000010419	ENSCMIP00000001677	IRF tryptophan pentad repeat domain-containing protein.	Uncharacterized protein.	0.979
ENSCMIP00000010419	tbk1	ENSCMIP00000010419	ENSCMIP00000018885	IRF tryptophan pentad repeat domain-containing protein.	Serine/threonine-protein kinase TBK1-like protein.	0.910
ENSCMIP00000027439	ddx41	ENSCMIP00000027439	ENSCMIP00000043646	RING-type domain-containing protein.	Uncharacterized protein.	0.425
ENSCMIP00000027439	sting1	ENSCMIP00000027439	ENSCMIP00000001677	RING-type domain-containing protein.	Uncharacterized protein.	0.797
LOC103173936	ddx41	ENSCMIP00000005604	ENSCMIP00000043646	IRF-3 domain-containing protein.	Uncharacterized protein.	0.730
LOC103173936	ikbke	ENSCMIP00000005604	ENSCMIP00000031776	IRF-3 domain-containing protein.	Protein kinase domain-containing protein.	0.990
LOC103173936	rps27a	ENSCMIP00000005604	ENSCMIP00000006356	IRF-3 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.409
LOC103173936	sting1	ENSCMIP00000005604	ENSCMIP00000001677	IRF-3 domain-containing protein.	Uncharacterized protein.	0.979
LOC103173936	tbk1	ENSCMIP00000005604	ENSCMIP00000018885	IRF-3 domain-containing protein.	Serine/threonine-protein kinase TBK1-like protein.	0.993
LOC103176229	ikbke	ENSCMIP00000048449	ENSCMIP00000031776	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Protein kinase domain-containing protein.	0.909
LOC103176229	sting1	ENSCMIP00000048449	ENSCMIP00000001677	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Uncharacterized protein.	0.805
LOC103176229	tbk1	ENSCMIP00000048449	ENSCMIP00000018885	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Serine/threonine-protein kinase TBK1-like protein.	0.909
LOC103176229	zdhhc1	ENSCMIP00000048449	ENSCMIP00000026421	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.909
LOC103189418	ddx41	ENSCMIP00000027867	ENSCMIP00000043646	E3 ubiquitin-protein ligase TRIM56-like protein.	Uncharacterized protein.	0.425
LOC103189418	sting1	ENSCMIP00000027867	ENSCMIP00000001677	E3 ubiquitin-protein ligase TRIM56-like protein.	Uncharacterized protein.	0.797
ddx41	ENSCMIP00000010419	ENSCMIP00000043646	ENSCMIP00000010419	Uncharacterized protein.	IRF tryptophan pentad repeat domain-containing protein.	0.682
ddx41	ENSCMIP00000027439	ENSCMIP00000043646	ENSCMIP00000027439	Uncharacterized protein.	RING-type domain-containing protein.	0.425