rpp21 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

rpp21

Uncharacterized protein. (361 aa)

Predicted Functional Partners:

rpp30

0.972

pop5

0.971

pop4

0.971

pop1

0.970

Rpp25

0.864

ENSCMIP00000016706

0.805

Rpp38

0.805

rpp25l

0.797

rps12

0.747

rsrc1

0.747

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000016706	Rpp25	ENSCMIP00000016706	ENSCMIP00000026460	Uncharacterized protein.	Alba domain-containing protein.	0.958
ENSCMIP00000016706	pop1	ENSCMIP00000016706	ENSCMIP00000004673	Uncharacterized protein.	Uncharacterized protein.	0.825
ENSCMIP00000016706	pop4	ENSCMIP00000016706	ENSCMIP00000037568	Uncharacterized protein.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.970
ENSCMIP00000016706	pop5	ENSCMIP00000016706	ENSCMIP00000017417	Uncharacterized protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.934
ENSCMIP00000016706	rpp21	ENSCMIP00000016706	ENSCMIP00000001679	Uncharacterized protein.	Uncharacterized protein.	0.805
ENSCMIP00000016706	rpp25l	ENSCMIP00000016706	ENSCMIP00000023618	Uncharacterized protein.	Alba-like protein C9orf23.	0.644
ENSCMIP00000016706	rpp30	ENSCMIP00000016706	ENSCMIP00000045777	Uncharacterized protein.	Ribonuclease P protein subunit p30.	0.932
ENSCMIP00000016706	rps12	ENSCMIP00000016706	ENSCMIP00000040644	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.592
ENSCMIP00000016706	rsrc1	ENSCMIP00000016706	ENSCMIP00000043823	Uncharacterized protein.	Arginine/serine-rich coiled-coil 1.	0.592
Rpp25	ENSCMIP00000016706	ENSCMIP00000026460	ENSCMIP00000016706	Alba domain-containing protein.	Uncharacterized protein.	0.958
Rpp25	Rpp38	ENSCMIP00000026460	ENSCMIP00000037391	Alba domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.993
Rpp25	pop1	ENSCMIP00000026460	ENSCMIP00000004673	Alba domain-containing protein.	Uncharacterized protein.	0.995
Rpp25	pop4	ENSCMIP00000026460	ENSCMIP00000037568	Alba domain-containing protein.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.997
Rpp25	pop5	ENSCMIP00000026460	ENSCMIP00000017417	Alba domain-containing protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.997
Rpp25	rpp21	ENSCMIP00000026460	ENSCMIP00000001679	Alba domain-containing protein.	Uncharacterized protein.	0.864
Rpp25	rpp25l	ENSCMIP00000026460	ENSCMIP00000023618	Alba domain-containing protein.	Alba-like protein C9orf23.	0.903
Rpp25	rpp30	ENSCMIP00000026460	ENSCMIP00000045777	Alba domain-containing protein.	Ribonuclease P protein subunit p30.	0.998
Rpp25	rps12	ENSCMIP00000026460	ENSCMIP00000040644	Alba domain-containing protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.455
Rpp25	rsrc1	ENSCMIP00000026460	ENSCMIP00000043823	Alba domain-containing protein.	Arginine/serine-rich coiled-coil 1.	0.455
Rpp38	Rpp25	ENSCMIP00000037391	ENSCMIP00000026460	Ribosomal_L7Ae domain-containing protein.	Alba domain-containing protein.	0.993