rad1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

rad1

Uncharacterized protein. (479 aa)

Predicted Functional Partners:

rad9b

0.999

hus1

0.999

atr

0.994

rad17

0.994

Rhno1

0.988

rfc4

0.985

zbtb14

0.962

atm

0.958

LOC103173653

0.956

rpa1

0.953

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103173653	Rhno1	ENSCMIP00000003658	ENSCMIP00000030633	Uncharacterized protein.	Uncharacterized protein.	0.592
LOC103173653	atm	ENSCMIP00000003658	ENSCMIP00000019360	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.733
LOC103173653	atr	ENSCMIP00000003658	ENSCMIP00000014069	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.652
LOC103173653	hus1	ENSCMIP00000003658	ENSCMIP00000043922	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.877
LOC103173653	rad1	ENSCMIP00000003658	ENSCMIP00000001691	Uncharacterized protein.	Uncharacterized protein.	0.956
LOC103173653	rad17	ENSCMIP00000003658	ENSCMIP00000017897	Uncharacterized protein.	Uncharacterized protein.	0.808
LOC103173653	rad9b	ENSCMIP00000003658	ENSCMIP00000014299	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.816
LOC103173653	rfc4	ENSCMIP00000003658	ENSCMIP00000017951	Uncharacterized protein.	AAA domain-containing protein.	0.924
LOC103173653	rpa1	ENSCMIP00000003658	ENSCMIP00000046808	Uncharacterized protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.906
Rhno1	LOC103173653	ENSCMIP00000030633	ENSCMIP00000003658	Uncharacterized protein.	Uncharacterized protein.	0.592
Rhno1	atm	ENSCMIP00000030633	ENSCMIP00000019360	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.600
Rhno1	atr	ENSCMIP00000030633	ENSCMIP00000014069	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.710
Rhno1	hus1	ENSCMIP00000030633	ENSCMIP00000043922	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.962
Rhno1	rad1	ENSCMIP00000030633	ENSCMIP00000001691	Uncharacterized protein.	Uncharacterized protein.	0.988
Rhno1	rad17	ENSCMIP00000030633	ENSCMIP00000017897	Uncharacterized protein.	Uncharacterized protein.	0.586
Rhno1	rad9b	ENSCMIP00000030633	ENSCMIP00000014299	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.915
Rhno1	rfc4	ENSCMIP00000030633	ENSCMIP00000017951	Uncharacterized protein.	AAA domain-containing protein.	0.601
Rhno1	rpa1	ENSCMIP00000030633	ENSCMIP00000046808	Uncharacterized protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.656
atm	LOC103173653	ENSCMIP00000019360	ENSCMIP00000003658	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.733
atm	Rhno1	ENSCMIP00000019360	ENSCMIP00000030633	Non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.600