STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Col5a1Fibrillar collagen NC1 domain-containing protein. (423 aa)    
Predicted Functional Partners:
ENSCMIP00000001814
Uncharacterized protein.
 
    
0.914
ENSCMIP00000021563
Uncharacterized protein.
 
    
0.913
ENSCMIP00000001835
LAM_G_DOMAIN domain-containing protein.
 
      0.899
ENSCMIP00000021584
Uncharacterized protein.
 
      0.899
ENSCMIP00000045685
Uncharacterized protein.
 
    
0.892
col9a2
Uncharacterized protein.
 
    
0.867
ENSCMIP00000041032
Uncharacterized protein.
 
     
0.827
LOC103181583
VWFA domain-containing protein.
 
 
0.813
ENSCMIP00000039319
annotation not available
 
  
 
0.689
ENSCMIP00000017274
Uncharacterized protein.
 
    
0.686
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.