Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103174237HELICc2 domain-containing protein. (108 aa)    
Predicted Functional Partners:
ercc3
Uncharacterized protein.
   
 0.999
gtf2h1
Uncharacterized protein.
   
 0.998
gtf2h3
Uncharacterized protein.
    
 0.998
gtf2h2
General transcription factor IIH subunit.
    
 0.997
ccnh
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.995
gtf2h5
General transcription factor IIH subunit 5.
    
 0.995
mnat1
CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.
    
 0.993
xpa
DNA repair protein complementing XP-A cells-like protein.
    
 0.993
ercc4
ERCC4 domain-containing protein.
   
 0.984
mms19
Uncharacterized protein.
    
 0.977
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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