LOC103174241 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103174241

Uncharacterized protein. (127 aa)

Predicted Functional Partners:

star

0.720

LOC103180179

0.676

fdx1

0.627

ENSCMIP00000034840

0.627

fdx2

0.627

ENSCMIP00000001060

0.618

fdxr

0.618

stard3

0.562

hsd17b3

0.545

suox

0.516

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001060	ENSCMIP00000034840	ENSCMIP00000001060	ENSCMIP00000034840	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.871
ENSCMIP00000001060	LOC103174241	ENSCMIP00000001060	ENSCMIP00000001815	Uncharacterized protein.	Uncharacterized protein.	0.618
ENSCMIP00000001060	fdx1	ENSCMIP00000001060	ENSCMIP00000016451	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.871
ENSCMIP00000001060	fdx2	ENSCMIP00000001060	ENSCMIP00000039513	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.871
ENSCMIP00000001060	star	ENSCMIP00000001060	ENSCMIP00000014915	Uncharacterized protein.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.538
ENSCMIP00000001060	stard3	ENSCMIP00000001060	ENSCMIP00000017263	Uncharacterized protein.	Uncharacterized protein.	0.592
ENSCMIP00000034840	ENSCMIP00000001060	ENSCMIP00000034840	ENSCMIP00000001060	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein.	0.871
ENSCMIP00000034840	LOC103174241	ENSCMIP00000034840	ENSCMIP00000001815	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein.	0.627
ENSCMIP00000034840	LOC103180179	ENSCMIP00000034840	ENSCMIP00000003922	2Fe-2S ferredoxin-type domain-containing protein.	3 beta-hydroxysteroid dehydrogenase; Belongs to the 3-beta-HSD family.	0.425
ENSCMIP00000034840	fdxr	ENSCMIP00000034840	ENSCMIP00000006190	2Fe-2S ferredoxin-type domain-containing protein.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.871
ENSCMIP00000034840	star	ENSCMIP00000034840	ENSCMIP00000014915	2Fe-2S ferredoxin-type domain-containing protein.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.585
ENSCMIP00000034840	stard3	ENSCMIP00000034840	ENSCMIP00000017263	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein.	0.488
ENSCMIP00000034840	suox	ENSCMIP00000034840	ENSCMIP00000003314	2Fe-2S ferredoxin-type domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.643
LOC103174241	ENSCMIP00000001060	ENSCMIP00000001815	ENSCMIP00000001060	Uncharacterized protein.	Uncharacterized protein.	0.618
LOC103174241	ENSCMIP00000034840	ENSCMIP00000001815	ENSCMIP00000034840	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.627
LOC103174241	LOC103180179	ENSCMIP00000001815	ENSCMIP00000003922	Uncharacterized protein.	3 beta-hydroxysteroid dehydrogenase; Belongs to the 3-beta-HSD family.	0.676
LOC103174241	fdx1	ENSCMIP00000001815	ENSCMIP00000016451	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.627
LOC103174241	fdx2	ENSCMIP00000001815	ENSCMIP00000039513	Uncharacterized protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.627
LOC103174241	fdxr	ENSCMIP00000001815	ENSCMIP00000006190	Uncharacterized protein.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.618
LOC103174241	hsd17b3	ENSCMIP00000001815	ENSCMIP00000026386	Uncharacterized protein.	Testosterone 17-beta-dehydrogenase 3.	0.545