ENSCMIP00000001868 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000001868

dUTPase domain-containing protein. (68 aa)

Predicted Functional Partners:

ENSCMIP00000004389

0.720

ENSCMIP00000038560

0.673

tyms

0.673

nudcd1

0.629

dtymk

0.626

rfc3

0.622

rfc4

0.603

ENSCMIP00000001491

0.598

rrm1

0.598

mcm7

0.588

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001491	ENSCMIP00000001868	ENSCMIP00000001491	ENSCMIP00000001868	Uncharacterized protein.	dUTPase domain-containing protein.	0.598
ENSCMIP00000001491	ENSCMIP00000004389	ENSCMIP00000001491	ENSCMIP00000004389	Uncharacterized protein.	PCNA_N domain-containing protein.	0.804
ENSCMIP00000001491	ENSCMIP00000038560	ENSCMIP00000001491	ENSCMIP00000038560	Uncharacterized protein.	Thymidylat_synt domain-containing protein.	0.751
ENSCMIP00000001491	dtymk	ENSCMIP00000001491	ENSCMIP00000032776	Uncharacterized protein.	Thymidylate_kin domain-containing protein.	0.494
ENSCMIP00000001491	mcm7	ENSCMIP00000001491	ENSCMIP00000003559	Uncharacterized protein.	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	0.839
ENSCMIP00000001491	rfc3	ENSCMIP00000001491	ENSCMIP00000046166	Uncharacterized protein.	AAA domain-containing protein.	0.452
ENSCMIP00000001491	rfc4	ENSCMIP00000001491	ENSCMIP00000017951	Uncharacterized protein.	AAA domain-containing protein.	0.474
ENSCMIP00000001491	tyms	ENSCMIP00000001491	ENSCMIP00000038564	Uncharacterized protein.	Thymidylat_synt domain-containing protein.	0.751
ENSCMIP00000001868	ENSCMIP00000001491	ENSCMIP00000001868	ENSCMIP00000001491	dUTPase domain-containing protein.	Uncharacterized protein.	0.598
ENSCMIP00000001868	ENSCMIP00000004389	ENSCMIP00000001868	ENSCMIP00000004389	dUTPase domain-containing protein.	PCNA_N domain-containing protein.	0.720
ENSCMIP00000001868	ENSCMIP00000038560	ENSCMIP00000001868	ENSCMIP00000038560	dUTPase domain-containing protein.	Thymidylat_synt domain-containing protein.	0.673
ENSCMIP00000001868	dtymk	ENSCMIP00000001868	ENSCMIP00000032776	dUTPase domain-containing protein.	Thymidylate_kin domain-containing protein.	0.626
ENSCMIP00000001868	mcm7	ENSCMIP00000001868	ENSCMIP00000003559	dUTPase domain-containing protein.	DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]	0.588
ENSCMIP00000001868	nudcd1	ENSCMIP00000001868	ENSCMIP00000030077	dUTPase domain-containing protein.	CS domain-containing protein.	0.629
ENSCMIP00000001868	rfc3	ENSCMIP00000001868	ENSCMIP00000046166	dUTPase domain-containing protein.	AAA domain-containing protein.	0.622
ENSCMIP00000001868	rfc4	ENSCMIP00000001868	ENSCMIP00000017951	dUTPase domain-containing protein.	AAA domain-containing protein.	0.603
ENSCMIP00000001868	rrm1	ENSCMIP00000001868	ENSCMIP00000003888	dUTPase domain-containing protein.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.598
ENSCMIP00000001868	tyms	ENSCMIP00000001868	ENSCMIP00000038564	dUTPase domain-containing protein.	Thymidylat_synt domain-containing protein.	0.673
ENSCMIP00000004389	ENSCMIP00000001491	ENSCMIP00000004389	ENSCMIP00000001491	PCNA_N domain-containing protein.	Uncharacterized protein.	0.804
ENSCMIP00000004389	ENSCMIP00000001868	ENSCMIP00000004389	ENSCMIP00000001868	PCNA_N domain-containing protein.	dUTPase domain-containing protein.	0.720