STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000001982CCHC-type domain-containing protein. (209 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.995
sf3a2
Matrin-type domain-containing protein.
   
 0.989
sf3a1
Uncharacterized protein.
   
 0.987
sf3a3
Splicing factor 3A subunit 3.
   
 0.972
ddx46
Uncharacterized protein.
   
 0.971
cdc5l
Cell division cycle 5-like protein.
   
 
 0.970
sf3b1
TOG domain-containing protein.
   
 0.878
rbm25
Uncharacterized protein.
   
 0.872
prpf40a
Uncharacterized protein.
   
 0.810
Srrm3
Cwf21 domain-containing protein.
   
 0.798
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.