STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103174269Uncharacterized protein. (126 aa)    
Predicted Functional Partners:
mvd
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
    
   0.909
eri2
Exonuclease domain-containing protein.
    
   0.591
LOC103178174
Sec3-PIP2_bind domain-containing protein.
      
 0.586
ENSCMIP00000004681
tRNA_SAD domain-containing protein.
  
    0.558
ppm1e
PPM-type phosphatase domain-containing protein.
      
 0.555
yars1
Tyrosine--tRNA ligase.
      
 0.509
ears2
tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.502
gtpbp1
Tr-type G domain-containing protein.
      
 0.484
eprs1
Uncharacterized protein.
     
 0.482
asnsd1
Glutamine amidotransferase type-2 domain-containing protein.
      
 0.471
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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