Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
otud5Uncharacterized protein. (187 aa)    
Predicted Functional Partners:
Ubc
Ubiquitin-like domain-containing protein.
    
 0.916
uba52
Ribosomal protein L40-like isoform 1.
    
  0.844
rps27a
Ubiquitin-like domain-containing protein.
    
 0.834
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.678
josd2
Josephin-2.
      
 0.670
Uchl5
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.653
atg3
Autophagy-related protein 3.
   
  
 0.650
usp19
Uncharacterized protein.
    
 
 0.631
senp8
ULP_PROTEASE domain-containing protein.
      
 0.628
traf5
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.620
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.