dhx16 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

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[Homology]

Score

dhx16

Uncharacterized protein. (994 aa)

Predicted Functional Partners:

cdc40

0.984

ENSCMIP00000003367

0.978

dhx38

0.978

cwc22

0.978

ppil4

0.977

cwc27

0.977

rnf113a

0.962

LOC103172154

0.958

sf3a3

0.942

ENSCMIP00000001651

0.941

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001651	ENSCMIP00000003367	ENSCMIP00000001651	ENSCMIP00000003367	Uncharacterized protein.	Uncharacterized protein.	0.957
ENSCMIP00000001651	LOC103172154	ENSCMIP00000001651	ENSCMIP00000000209	Uncharacterized protein.	Uncharacterized protein.	0.760
ENSCMIP00000001651	cdc40	ENSCMIP00000001651	ENSCMIP00000037798	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.931
ENSCMIP00000001651	cwc22	ENSCMIP00000001651	ENSCMIP00000033294	Uncharacterized protein.	MI domain-containing protein.	0.948
ENSCMIP00000001651	cwc27	ENSCMIP00000001651	ENSCMIP00000046415	Uncharacterized protein.	PPIase cyclophilin-type domain-containing protein.	0.764
ENSCMIP00000001651	dhx16	ENSCMIP00000001651	ENSCMIP00000002023	Uncharacterized protein.	Uncharacterized protein.	0.941
ENSCMIP00000001651	dhx38	ENSCMIP00000001651	ENSCMIP00000032328	Uncharacterized protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like protein.	0.926
ENSCMIP00000001651	ppil4	ENSCMIP00000001651	ENSCMIP00000017796	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.592
ENSCMIP00000001651	rnf113a	ENSCMIP00000001651	ENSCMIP00000009784	Uncharacterized protein.	Uncharacterized protein.	0.713
ENSCMIP00000001651	sf3a3	ENSCMIP00000001651	ENSCMIP00000036832	Uncharacterized protein.	Splicing factor 3A subunit 3.	0.878
ENSCMIP00000003367	ENSCMIP00000001651	ENSCMIP00000003367	ENSCMIP00000001651	Uncharacterized protein.	Uncharacterized protein.	0.957
ENSCMIP00000003367	LOC103172154	ENSCMIP00000003367	ENSCMIP00000000209	Uncharacterized protein.	Uncharacterized protein.	0.931
ENSCMIP00000003367	cdc40	ENSCMIP00000003367	ENSCMIP00000037798	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.857
ENSCMIP00000003367	cwc22	ENSCMIP00000003367	ENSCMIP00000033294	Uncharacterized protein.	MI domain-containing protein.	0.877
ENSCMIP00000003367	cwc27	ENSCMIP00000003367	ENSCMIP00000046415	Uncharacterized protein.	PPIase cyclophilin-type domain-containing protein.	0.855
ENSCMIP00000003367	dhx16	ENSCMIP00000003367	ENSCMIP00000002023	Uncharacterized protein.	Uncharacterized protein.	0.978
ENSCMIP00000003367	dhx38	ENSCMIP00000003367	ENSCMIP00000032328	Uncharacterized protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like protein.	0.632
ENSCMIP00000003367	ppil4	ENSCMIP00000003367	ENSCMIP00000017796	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.748
ENSCMIP00000003367	rnf113a	ENSCMIP00000003367	ENSCMIP00000009784	Uncharacterized protein.	Uncharacterized protein.	0.958
ENSCMIP00000003367	sf3a3	ENSCMIP00000003367	ENSCMIP00000036832	Uncharacterized protein.	Splicing factor 3A subunit 3.	0.991