Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtcaUncharacterized protein. (364 aa)    
Predicted Functional Partners:
bms1
Bms1-type G domain-containing protein.
   
 0.933
rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
  
  
 0.911
pwp2
WD_REPEATS_REGION domain-containing protein.
   
 
 0.898
wdr43
WD_REPEATS_REGION domain-containing protein.
   
 0.892
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.887
ENSCMIP00000010876
Brix domain-containing protein.
   
 
 0.886
nol6
Nucleolar protein 6.
   
 0.882
utp4
Cirhin.
   
 0.880
wdr75
Uncharacterized protein.
   
 0.873
imp3
IMP3, U3 small nucleolar ribonucleoprotein-like protein.
   
 0.872
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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