dnaaf4 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dnaaf4

Dyslexia susceptibility 1 candidate 1. (442 aa)

Predicted Functional Partners:

leo1

0.882

ruvbl1

0.697

dcdc2

0.695

bbs9

0.656

bbs7

0.643

pih1d3

0.642

polr2j

0.639

ENSCMIP00000004369

0.625

ift57

0.623

dnaaf3

0.619

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000004369	dnaaf3	ENSCMIP00000004369	ENSCMIP00000028648	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Uncharacterized protein.	0.407
ENSCMIP00000004369	dnaaf4	ENSCMIP00000004369	ENSCMIP00000002075	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	Dyslexia susceptibility 1 candidate 1.	0.625
ENSCMIP00000004369	pih1d3	ENSCMIP00000004369	ENSCMIP00000000362	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	PIH1_CS domain-containing protein.	0.552
ENSCMIP00000004369	ruvbl1	ENSCMIP00000004369	ENSCMIP00000047092	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.999
bbs7	bbs9	ENSCMIP00000019829	ENSCMIP00000035601	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Uncharacterized protein.	0.996
bbs7	dnaaf4	ENSCMIP00000019829	ENSCMIP00000002075	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Dyslexia susceptibility 1 candidate 1.	0.643
bbs7	ift57	ENSCMIP00000019829	ENSCMIP00000045937	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Uncharacterized protein.	0.553
bbs9	bbs7	ENSCMIP00000035601	ENSCMIP00000019829	Uncharacterized protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.996
bbs9	dnaaf4	ENSCMIP00000035601	ENSCMIP00000002075	Uncharacterized protein.	Dyslexia susceptibility 1 candidate 1.	0.656
bbs9	ift57	ENSCMIP00000035601	ENSCMIP00000045937	Uncharacterized protein.	Uncharacterized protein.	0.416
dcdc2	dnaaf4	ENSCMIP00000018639	ENSCMIP00000002075	Doublecortin domain-containing protein.	Dyslexia susceptibility 1 candidate 1.	0.695
dnaaf3	ENSCMIP00000004369	ENSCMIP00000028648	ENSCMIP00000004369	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.407
dnaaf3	dnaaf4	ENSCMIP00000028648	ENSCMIP00000002075	Uncharacterized protein.	Dyslexia susceptibility 1 candidate 1.	0.619
dnaaf3	pih1d3	ENSCMIP00000028648	ENSCMIP00000000362	Uncharacterized protein.	PIH1_CS domain-containing protein.	0.552
dnaaf4	ENSCMIP00000004369	ENSCMIP00000002075	ENSCMIP00000004369	Dyslexia susceptibility 1 candidate 1.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.625
dnaaf4	bbs7	ENSCMIP00000002075	ENSCMIP00000019829	Dyslexia susceptibility 1 candidate 1.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.643
dnaaf4	bbs9	ENSCMIP00000002075	ENSCMIP00000035601	Dyslexia susceptibility 1 candidate 1.	Uncharacterized protein.	0.656
dnaaf4	dcdc2	ENSCMIP00000002075	ENSCMIP00000018639	Dyslexia susceptibility 1 candidate 1.	Doublecortin domain-containing protein.	0.695
dnaaf4	dnaaf3	ENSCMIP00000002075	ENSCMIP00000028648	Dyslexia susceptibility 1 candidate 1.	Uncharacterized protein.	0.619
dnaaf4	ift57	ENSCMIP00000002075	ENSCMIP00000045937	Dyslexia susceptibility 1 candidate 1.	Uncharacterized protein.	0.623