pgbd5 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

pgbd5

Uncharacterized protein. (450 aa)

Predicted Functional Partners:

cd247

0.699

LOC103171635

0.602

LOC103174199

0.599

qrich1

0.580

ENSCMIP00000034774

0.565

ENSCMIP00000003450

0.554

LOC103188581

0.535

oxsm

0.525

eed

0.478

tmem145

0.473

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003450	ENSCMIP00000034774	ENSCMIP00000003450	ENSCMIP00000034774	DDE Tnp4 domain-containing protein.	Integrase catalytic domain-containing protein.	0.552
ENSCMIP00000003450	pgbd5	ENSCMIP00000003450	ENSCMIP00000002079	DDE Tnp4 domain-containing protein.	Uncharacterized protein.	0.554
ENSCMIP00000003450	qrich1	ENSCMIP00000003450	ENSCMIP00000048973	DDE Tnp4 domain-containing protein.	Glutamine-rich protein 1-like protein.	0.597
ENSCMIP00000034774	ENSCMIP00000003450	ENSCMIP00000034774	ENSCMIP00000003450	Integrase catalytic domain-containing protein.	DDE Tnp4 domain-containing protein.	0.552
ENSCMIP00000034774	pgbd5	ENSCMIP00000034774	ENSCMIP00000002079	Integrase catalytic domain-containing protein.	Uncharacterized protein.	0.565
LOC103171635	pgbd5	ENSCMIP00000011950	ENSCMIP00000002079	SAM domain-containing protein.	Uncharacterized protein.	0.602
LOC103174199	eed	ENSCMIP00000001563	ENSCMIP00000033741	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.681
LOC103174199	pgbd5	ENSCMIP00000001563	ENSCMIP00000002079	Uncharacterized protein.	Uncharacterized protein.	0.599
LOC103188581	pgbd5	ENSCMIP00000032720	ENSCMIP00000002079	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Uncharacterized protein.	0.535
cd247	pgbd5	ENSCMIP00000000733	ENSCMIP00000002079	Uncharacterized protein.	Uncharacterized protein.	0.699
eed	LOC103174199	ENSCMIP00000033741	ENSCMIP00000001563	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.681
eed	pgbd5	ENSCMIP00000033741	ENSCMIP00000002079	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.478
oxsm	pgbd5	ENSCMIP00000037793	ENSCMIP00000002079	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Uncharacterized protein.	0.525
pgbd5	ENSCMIP00000003450	ENSCMIP00000002079	ENSCMIP00000003450	Uncharacterized protein.	DDE Tnp4 domain-containing protein.	0.554
pgbd5	ENSCMIP00000034774	ENSCMIP00000002079	ENSCMIP00000034774	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.565
pgbd5	LOC103171635	ENSCMIP00000002079	ENSCMIP00000011950	Uncharacterized protein.	SAM domain-containing protein.	0.602
pgbd5	LOC103174199	ENSCMIP00000002079	ENSCMIP00000001563	Uncharacterized protein.	Uncharacterized protein.	0.599
pgbd5	LOC103188581	ENSCMIP00000002079	ENSCMIP00000032720	Uncharacterized protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.535
pgbd5	cd247	ENSCMIP00000002079	ENSCMIP00000000733	Uncharacterized protein.	Uncharacterized protein.	0.699
pgbd5	eed	ENSCMIP00000002079	ENSCMIP00000033741	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.478