ENSCMIP00000002083 protein (Callorhinchus milii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSCMIP00000002083

Uncharacterized protein. (115 aa)

Predicted Functional Partners:

cfap161

0.813

efcab1

0.803

efhc2

0.793

LOC103183190

0.790

ENSCMIP00000037830

0.789

LOC103184705

0.778

rsph14

0.772

armc4

0.761

ENSCMIP00000000075

0.753

tekt2

0.753

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000000075	ENSCMIP00000002083	ENSCMIP00000000075	ENSCMIP00000002083	Uncharacterized protein.	Uncharacterized protein.	0.753
ENSCMIP00000000075	ENSCMIP00000037830	ENSCMIP00000000075	ENSCMIP00000037830	Uncharacterized protein.	Uncharacterized protein.	0.738
ENSCMIP00000000075	LOC103183190	ENSCMIP00000000075	ENSCMIP00000015621	Uncharacterized protein.	Uncharacterized protein.	0.738
ENSCMIP00000000075	LOC103184705	ENSCMIP00000000075	ENSCMIP00000001663	Uncharacterized protein.	Uncharacterized protein.	0.746
ENSCMIP00000000075	armc4	ENSCMIP00000000075	ENSCMIP00000011178	Uncharacterized protein.	Uncharacterized protein.	0.742
ENSCMIP00000000075	cfap161	ENSCMIP00000000075	ENSCMIP00000007339	Uncharacterized protein.	Uncharacterized protein.	0.922
ENSCMIP00000000075	efcab1	ENSCMIP00000000075	ENSCMIP00000039885	Uncharacterized protein.	Uncharacterized protein.	0.742
ENSCMIP00000000075	efhc2	ENSCMIP00000000075	ENSCMIP00000026613	Uncharacterized protein.	Uncharacterized protein.	0.748
ENSCMIP00000000075	rsph14	ENSCMIP00000000075	ENSCMIP00000008936	Uncharacterized protein.	Rhabdoid tumor deletion region protein 1.	0.915
ENSCMIP00000000075	tekt2	ENSCMIP00000000075	ENSCMIP00000013607	Uncharacterized protein.	Uncharacterized protein.	0.769
ENSCMIP00000002083	ENSCMIP00000000075	ENSCMIP00000002083	ENSCMIP00000000075	Uncharacterized protein.	Uncharacterized protein.	0.753
ENSCMIP00000002083	ENSCMIP00000037830	ENSCMIP00000002083	ENSCMIP00000037830	Uncharacterized protein.	Uncharacterized protein.	0.789
ENSCMIP00000002083	LOC103183190	ENSCMIP00000002083	ENSCMIP00000015621	Uncharacterized protein.	Uncharacterized protein.	0.790
ENSCMIP00000002083	LOC103184705	ENSCMIP00000002083	ENSCMIP00000001663	Uncharacterized protein.	Uncharacterized protein.	0.778
ENSCMIP00000002083	armc4	ENSCMIP00000002083	ENSCMIP00000011178	Uncharacterized protein.	Uncharacterized protein.	0.761
ENSCMIP00000002083	cfap161	ENSCMIP00000002083	ENSCMIP00000007339	Uncharacterized protein.	Uncharacterized protein.	0.813
ENSCMIP00000002083	efcab1	ENSCMIP00000002083	ENSCMIP00000039885	Uncharacterized protein.	Uncharacterized protein.	0.803
ENSCMIP00000002083	efhc2	ENSCMIP00000002083	ENSCMIP00000026613	Uncharacterized protein.	Uncharacterized protein.	0.793
ENSCMIP00000002083	rsph14	ENSCMIP00000002083	ENSCMIP00000008936	Uncharacterized protein.	Rhabdoid tumor deletion region protein 1.	0.772
ENSCMIP00000002083	tekt2	ENSCMIP00000002083	ENSCMIP00000013607	Uncharacterized protein.	Uncharacterized protein.	0.753