Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103171888Coiled-coil-helix-coiled-coil-helix domain-containing protein 8-like protein. (89 aa)    
Predicted Functional Partners:
ssbp1
Single-stranded DNA-binding protein, mitochondrial.
   
 
 0.812
cmc2
COX assembly mitochondrial protein.
   
 
 0.750
smim20
Uncharacterized protein C4orf52-like protein.
   
  
 0.712
cmc4
Mature T-cell proliferation 1 neighbor protein-like protein.
    
 0.679
lyrm7
Uncharacterized protein.
   
  
 0.675
LOC103181724
Uncharacterized protein.
   
 
 0.672
msh6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
 
 0.666
sdhaf4
Uncharacterized protein.
      
 0.587
txnl4b
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
  
 0.572
chchd4
Mitochondrial intermembrane space import and assembly protein 40-A.
   
 
 0.549
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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