wapl protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

wapl

WAPL domain-containing protein. (1180 aa)

Predicted Functional Partners:

smc3

0.998

rad21

0.988

ENSCMIP00000016420

0.972

pds5a

0.968

pds5b

0.968

mau2

0.938

LOC103171617

0.890

LOC103190678

0.882

LOC103174083

0.827

LOC103174205

0.827

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000016420	LOC103171617	ENSCMIP00000016420	ENSCMIP00000011775	Uncharacterized protein.	Uncharacterized protein.	0.780
ENSCMIP00000016420	LOC103174083	ENSCMIP00000016420	ENSCMIP00000000676	Uncharacterized protein.	Uncharacterized protein.	0.734
ENSCMIP00000016420	LOC103174205	ENSCMIP00000016420	ENSCMIP00000001576	Uncharacterized protein.	Uncharacterized protein.	0.734
ENSCMIP00000016420	LOC103190678	ENSCMIP00000016420	ENSCMIP00000040822	Uncharacterized protein.	Peptidase C50 domain-containing protein.	0.848
ENSCMIP00000016420	mau2	ENSCMIP00000016420	ENSCMIP00000009971	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.677
ENSCMIP00000016420	pds5a	ENSCMIP00000016420	ENSCMIP00000027591	Uncharacterized protein.	Uncharacterized protein.	0.919
ENSCMIP00000016420	pds5b	ENSCMIP00000016420	ENSCMIP00000046735	Uncharacterized protein.	Uncharacterized protein.	0.919
ENSCMIP00000016420	rad21	ENSCMIP00000016420	ENSCMIP00000044430	Uncharacterized protein.	Uncharacterized protein.	0.963
ENSCMIP00000016420	smc3	ENSCMIP00000016420	ENSCMIP00000046001	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.995
ENSCMIP00000016420	wapl	ENSCMIP00000016420	ENSCMIP00000002191	Uncharacterized protein.	WAPL domain-containing protein.	0.972
LOC103171617	ENSCMIP00000016420	ENSCMIP00000011775	ENSCMIP00000016420	Uncharacterized protein.	Uncharacterized protein.	0.780
LOC103171617	LOC103174083	ENSCMIP00000011775	ENSCMIP00000000676	Uncharacterized protein.	Uncharacterized protein.	0.763
LOC103171617	LOC103174205	ENSCMIP00000011775	ENSCMIP00000001576	Uncharacterized protein.	Uncharacterized protein.	0.886
LOC103171617	LOC103190678	ENSCMIP00000011775	ENSCMIP00000040822	Uncharacterized protein.	Peptidase C50 domain-containing protein.	0.910
LOC103171617	mau2	ENSCMIP00000011775	ENSCMIP00000009971	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.745
LOC103171617	pds5a	ENSCMIP00000011775	ENSCMIP00000027591	Uncharacterized protein.	Uncharacterized protein.	0.879
LOC103171617	pds5b	ENSCMIP00000011775	ENSCMIP00000046735	Uncharacterized protein.	Uncharacterized protein.	0.879
LOC103171617	rad21	ENSCMIP00000011775	ENSCMIP00000044430	Uncharacterized protein.	Uncharacterized protein.	0.903
LOC103171617	smc3	ENSCMIP00000011775	ENSCMIP00000046001	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.949
LOC103171617	wapl	ENSCMIP00000011775	ENSCMIP00000002191	Uncharacterized protein.	WAPL domain-containing protein.	0.890