Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSCMIP00000002214Ribosomal_L16 domain-containing protein. (123 aa)    
Predicted Functional Partners:
uba52
Ribosomal protein L40-like isoform 1.
   
 0.999
Rpl36al
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.
  
 0.998
rpl30
Ribosomal_L7Ae domain-containing protein.
   
 0.998
fau
Ubiquitin-like domain-containing protein.
   
 0.998
rpl7a
Ribosomal_L7Ae domain-containing protein.
  
 0.998
rpl23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 0.998
rpl27
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
  
 0.998
rpl21
60S ribosomal protein L21.
  
 0.998
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.998
rpl35a
Uncharacterized protein.
  
 0.998
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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