Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
parp3Poly [ADP-ribose] polymerase. (525 aa)    
Predicted Functional Partners:
parp1
Poly [ADP-ribose] polymerase.
  
 
0.993
parp4
Poly [ADP-ribose] polymerase.
     
0.967
parg
Uncharacterized protein.
    
 0.941
caspase-7
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.931
ENSCMIP00000000198
CASPASE_P20 domain-containing protein; Belongs to the peptidase C14A family.
    
 0.931
LOC103190313
CASPASE_P20 domain-containing protein; Belongs to the peptidase C14A family.
    
 0.931
casp9
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.931
casp3
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.931
ENSCMIP00000004389
PCNA_N domain-containing protein.
   
 0.850
aplf
Uncharacterized protein.
    
 
 0.827
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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