mgat4c protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mgat4c

Uncharacterized protein. (468 aa)

Predicted Functional Partners:

mgat5

0.957

Mgat5b

0.943

ccdc126

0.930

ENSCMIP00000002064

0.902

LOC103179072

0.901

fam221a

0.687

LOC103190632

0.611

Flrt2

0.588

ENSCMIP00000010778

0.584

tmtc3

0.561

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000002064	LOC103179072	ENSCMIP00000002064	ENSCMIP00000042255	Uncharacterized protein.	Uncharacterized protein.	0.902
ENSCMIP00000002064	Mgat5b	ENSCMIP00000002064	ENSCMIP00000043862	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000002064	ccdc126	ENSCMIP00000002064	ENSCMIP00000040115	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000002064	mgat4c	ENSCMIP00000002064	ENSCMIP00000002294	Uncharacterized protein.	Uncharacterized protein.	0.902
ENSCMIP00000002064	mgat5	ENSCMIP00000002064	ENSCMIP00000017292	Uncharacterized protein.	Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like protein.	0.900
ENSCMIP00000010778	LOC103179072	ENSCMIP00000010778	ENSCMIP00000042255	Uncharacterized protein.	Uncharacterized protein.	0.449
ENSCMIP00000010778	mgat4c	ENSCMIP00000010778	ENSCMIP00000002294	Uncharacterized protein.	Uncharacterized protein.	0.584
Flrt2	fam221a	ENSCMIP00000033931	ENSCMIP00000040098	Uncharacterized protein.	Uncharacterized protein.	0.588
Flrt2	mgat4c	ENSCMIP00000033931	ENSCMIP00000002294	Uncharacterized protein.	Uncharacterized protein.	0.588
LOC103179072	ENSCMIP00000002064	ENSCMIP00000042255	ENSCMIP00000002064	Uncharacterized protein.	Uncharacterized protein.	0.902
LOC103179072	ENSCMIP00000010778	ENSCMIP00000042255	ENSCMIP00000010778	Uncharacterized protein.	Uncharacterized protein.	0.449
LOC103179072	LOC103190632	ENSCMIP00000042255	ENSCMIP00000039763	Uncharacterized protein.	UPF0444 transmembrane protein C12orf23-like protein.	0.444
LOC103179072	Mgat5b	ENSCMIP00000042255	ENSCMIP00000043862	Uncharacterized protein.	Uncharacterized protein.	0.928
LOC103179072	ccdc126	ENSCMIP00000042255	ENSCMIP00000040115	Uncharacterized protein.	Uncharacterized protein.	0.930
LOC103179072	fam221a	ENSCMIP00000042255	ENSCMIP00000040098	Uncharacterized protein.	Uncharacterized protein.	0.510
LOC103179072	mgat4c	ENSCMIP00000042255	ENSCMIP00000002294	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC103179072	mgat5	ENSCMIP00000042255	ENSCMIP00000017292	Uncharacterized protein.	Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like protein.	0.930
LOC103190632	LOC103179072	ENSCMIP00000039763	ENSCMIP00000042255	UPF0444 transmembrane protein C12orf23-like protein.	Uncharacterized protein.	0.444
LOC103190632	mgat4c	ENSCMIP00000039763	ENSCMIP00000002294	UPF0444 transmembrane protein C12orf23-like protein.	Uncharacterized protein.	0.611
Mgat5b	ENSCMIP00000002064	ENSCMIP00000043862	ENSCMIP00000002064	Uncharacterized protein.	Uncharacterized protein.	0.900