Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmga1Uncharacterized protein. (252 aa)    
Predicted Functional Partners:
ENSCMIP00000044976
Uncharacterized protein.
  
0.878
parp1
Poly [ADP-ribose] polymerase.
    
   0.763
hmgcr
3-hydroxy-3-methylglutaryl coenzyme A reductase.
      
 0.683
LOC103188581
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
  0.660
prmt6
Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.
   
 
 0.646
sp1
Uncharacterized protein.
    
 
 0.645
orc6
Uncharacterized protein.
    
 
 0.627
rps10
S10_plectin domain-containing protein.
   
  
 0.617
cabin1
TPR_REGION domain-containing protein.
    
  0.615
jun
Jun domain-containing protein.
    
 
 0.605
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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