Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrriq1Uncharacterized protein. (1482 aa)    
Predicted Functional Partners:
ccdc113
DUF4201 domain-containing protein.
   
 
 0.775
Ak9
Uncharacterized protein.
    
 
 0.766
ENSCMIP00000035595
Uncharacterized protein.
    
 
 0.766
smc2
Structural maintenance of chromosomes protein.
   
   0.746
fem1b
Uncharacterized protein.
    
 0.682
ENSCMIP00000029898
Uncharacterized protein.
   
  
 0.676
ENSCMIP00000003864
Uncharacterized protein.
   
 
 0.617
ENSCMIP00000005060
NDK domain-containing protein; Belongs to the NDK family.
    
 0.557
ENSCMIP00000009853
Uncharacterized protein.
   
  0.557
ENSCMIP00000009865
Uncharacterized protein.
   
  0.557
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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