Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lemd2LEM domain-containing protein. (527 aa)    
Predicted Functional Partners:
chmp7
Uncharacterized protein.
     
 0.884
ist1
IST1-like protein.
    
 0.811
banf1
Barrier-to-autointegration factor.
    
 0.782
rrbp1
Rib_recp_KP_reg domain-containing protein.
   
 0.778
zdhhc6
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
 
 0.692
ankle2
LEM domain-containing protein.
    
 0.691
Rpgr
Uncharacterized protein.
    
 0.626
ENSCMIP00000020540
Uncharacterized protein.
      
 0.590
chmp6
Uncharacterized protein.
     
 0.585
dnajc24
Uncharacterized protein.
    
 
 0.567
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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