pet100 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Experiments

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[Homology]

Score

pet100

Uncharacterized protein. (67 aa)

Predicted Functional Partners:

ndufb1

0.855

ndufb4

0.747

pum2

0.723

pum1

0.723

ENSCMIP00000002032

0.690

LOC103177133

0.682

efcc1

0.659

spcs1

0.655

ENSCMIP00000019029

0.621

immt

0.619

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000002032	LOC103177133	ENSCMIP00000002032	ENSCMIP00000043306	Uncharacterized protein.	Uncharacterized protein.	0.880
ENSCMIP00000002032	ndufb1	ENSCMIP00000002032	ENSCMIP00000007860	Uncharacterized protein.	NADH dehydrogenase.	0.566
ENSCMIP00000002032	pet100	ENSCMIP00000002032	ENSCMIP00000002474	Uncharacterized protein.	Uncharacterized protein.	0.690
ENSCMIP00000002032	pum1	ENSCMIP00000002032	ENSCMIP00000042111	Uncharacterized protein.	PUM-HD domain-containing protein.	0.848
ENSCMIP00000002032	pum2	ENSCMIP00000002032	ENSCMIP00000037185	Uncharacterized protein.	PUM-HD domain-containing protein.	0.848
ENSCMIP00000019029	pet100	ENSCMIP00000019029	ENSCMIP00000002474	Uncharacterized protein.	Uncharacterized protein.	0.621
ENSCMIP00000019029	spcs1	ENSCMIP00000019029	ENSCMIP00000018314	Uncharacterized protein.	Uncharacterized protein.	0.636
LOC103177133	ENSCMIP00000002032	ENSCMIP00000043306	ENSCMIP00000002032	Uncharacterized protein.	Uncharacterized protein.	0.880
LOC103177133	pet100	ENSCMIP00000043306	ENSCMIP00000002474	Uncharacterized protein.	Uncharacterized protein.	0.682
LOC103177133	pum1	ENSCMIP00000043306	ENSCMIP00000042111	Uncharacterized protein.	PUM-HD domain-containing protein.	0.541
LOC103177133	pum2	ENSCMIP00000043306	ENSCMIP00000037185	Uncharacterized protein.	PUM-HD domain-containing protein.	0.541
efcc1	pet100	ENSCMIP00000024816	ENSCMIP00000002474	EF-hand domain-containing protein.	Uncharacterized protein.	0.659
immt	pet100	ENSCMIP00000026766	ENSCMIP00000002474	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Uncharacterized protein.	0.619
ndufb1	ENSCMIP00000002032	ENSCMIP00000007860	ENSCMIP00000002032	NADH dehydrogenase.	Uncharacterized protein.	0.566
ndufb1	ndufb4	ENSCMIP00000007860	ENSCMIP00000006856	NADH dehydrogenase.	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 4.	0.999
ndufb1	pet100	ENSCMIP00000007860	ENSCMIP00000002474	NADH dehydrogenase.	Uncharacterized protein.	0.855
ndufb4	ndufb1	ENSCMIP00000006856	ENSCMIP00000007860	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 4.	NADH dehydrogenase.	0.999
ndufb4	pet100	ENSCMIP00000006856	ENSCMIP00000002474	NADH dehydrogenase (Ubiquinone) 1 beta subcomplex 4.	Uncharacterized protein.	0.747
pet100	ENSCMIP00000002032	ENSCMIP00000002474	ENSCMIP00000002032	Uncharacterized protein.	Uncharacterized protein.	0.690
pet100	ENSCMIP00000019029	ENSCMIP00000002474	ENSCMIP00000019029	Uncharacterized protein.	Uncharacterized protein.	0.621