Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103171936RH2 domain-containing protein. (322 aa)    
Predicted Functional Partners:
rab7a
Uncharacterized protein.
    
 0.913
Tmem55a
Phosphatidylinositol-4,5-bisphosphate 4-phosphatase; Catalyzes the hydrolysis of phosphatidylinositol-4,5- bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P).
    
 
 0.752
cpd
Uncharacterized protein.
      
 0.632
phkg1
Protein kinase domain-containing protein.
    
   0.623
gosr1
Uncharacterized protein.
      
 0.615
c1qtnf5
Complement C1q tumor necrosis factor-related protein 5.
      
 0.606
Slc46a1
Uncharacterized protein.
      
 0.600
trappc11
Uncharacterized protein.
      
 0.589
nsg2
Uncharacterized protein.
      
 0.588
rilpl2
Uncharacterized protein.
      
 0.587
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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