Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc59Uncharacterized protein. (219 aa)    
Predicted Functional Partners:
ttf1
Uncharacterized protein.
   
 
  0.966
dmtf1
Uncharacterized protein.
   
 
  0.905
rpl26l1
Ribosomal protein L26 isoform 1.
   
   0.795
ubap1l
UMA domain-containing protein.
      
 0.746
Rpl36al
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.
    
   0.709
llph
Uncharacterized protein.
   
    0.708
rpl3
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
    
   0.678
gtf2h3
Uncharacterized protein.
      
 0.668
gle1
Nucleoporin GLE1.
   
  
 0.654
fam241a
DUF4605 domain-containing protein.
   
  
 0.645
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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