grid1 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

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Textmining

[Homology]

Score

grid1

Uncharacterized protein. (1027 aa)

Predicted Functional Partners:

grid2ip

0.804

Ak9

0.764

ENSCMIP00000035595

0.764

Setbp1

0.691

dach1

0.622

grm2

0.582

LOC103172906

0.582

scd5

0.578

gnb5

0.516

ENSCMIP00000005060

0.508

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ak9	ENSCMIP00000005060	ENSCMIP00000035587	ENSCMIP00000005060	Uncharacterized protein.	NDK domain-containing protein; Belongs to the NDK family.	0.677
Ak9	ENSCMIP00000035595	ENSCMIP00000035587	ENSCMIP00000035595	Uncharacterized protein.	Uncharacterized protein.	0.999
Ak9	grid1	ENSCMIP00000035587	ENSCMIP00000002697	Uncharacterized protein.	Uncharacterized protein.	0.764
ENSCMIP00000005060	Ak9	ENSCMIP00000005060	ENSCMIP00000035587	NDK domain-containing protein; Belongs to the NDK family.	Uncharacterized protein.	0.677
ENSCMIP00000005060	ENSCMIP00000035595	ENSCMIP00000005060	ENSCMIP00000035595	NDK domain-containing protein; Belongs to the NDK family.	Uncharacterized protein.	0.677
ENSCMIP00000005060	LOC103172906	ENSCMIP00000005060	ENSCMIP00000007763	NDK domain-containing protein; Belongs to the NDK family.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.443
ENSCMIP00000005060	grid1	ENSCMIP00000005060	ENSCMIP00000002697	NDK domain-containing protein; Belongs to the NDK family.	Uncharacterized protein.	0.508
ENSCMIP00000005060	grm2	ENSCMIP00000005060	ENSCMIP00000001979	NDK domain-containing protein; Belongs to the NDK family.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.443
ENSCMIP00000035595	Ak9	ENSCMIP00000035595	ENSCMIP00000035587	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSCMIP00000035595	ENSCMIP00000005060	ENSCMIP00000035595	ENSCMIP00000005060	Uncharacterized protein.	NDK domain-containing protein; Belongs to the NDK family.	0.677
ENSCMIP00000035595	grid1	ENSCMIP00000035595	ENSCMIP00000002697	Uncharacterized protein.	Uncharacterized protein.	0.764
LOC103172906	ENSCMIP00000005060	ENSCMIP00000007763	ENSCMIP00000005060	G_PROTEIN_RECEP_F3_4 domain-containing protein.	NDK domain-containing protein; Belongs to the NDK family.	0.443
LOC103172906	gnb5	ENSCMIP00000007763	ENSCMIP00000047205	G_PROTEIN_RECEP_F3_4 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.764
LOC103172906	grid1	ENSCMIP00000007763	ENSCMIP00000002697	G_PROTEIN_RECEP_F3_4 domain-containing protein.	Uncharacterized protein.	0.582
Setbp1	dach1	ENSCMIP00000020141	ENSCMIP00000020673	Uncharacterized protein.	Ski_Sno domain-containing protein.	0.681
Setbp1	grid1	ENSCMIP00000020141	ENSCMIP00000002697	Uncharacterized protein.	Uncharacterized protein.	0.691
dach1	Setbp1	ENSCMIP00000020673	ENSCMIP00000020141	Ski_Sno domain-containing protein.	Uncharacterized protein.	0.681
dach1	grid1	ENSCMIP00000020673	ENSCMIP00000002697	Ski_Sno domain-containing protein.	Uncharacterized protein.	0.622
gnb5	LOC103172906	ENSCMIP00000047205	ENSCMIP00000007763	WD_REPEATS_REGION domain-containing protein.	G_PROTEIN_RECEP_F3_4 domain-containing protein.	0.764
gnb5	grid1	ENSCMIP00000047205	ENSCMIP00000002697	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.516