LOC103180762 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103180762

A_deaminase domain-containing protein. (435 aa)

Predicted Functional Partners:

adk

0.983

LOC103188631

0.962

pnp

0.962

ada2

0.961

hddc2

0.938

dck

0.924

lacc1

0.914

LOC103191301

0.908

ada

0.902

nt5e

0.860

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103180762	LOC103188631	ENSCMIP00000002769	ENSCMIP00000005674	A_deaminase domain-containing protein.	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	0.962
LOC103180762	LOC103191301	ENSCMIP00000002769	ENSCMIP00000002852	A_deaminase domain-containing protein.	dNK domain-containing protein.	0.908
LOC103180762	ada	ENSCMIP00000002769	ENSCMIP00000030339	A_deaminase domain-containing protein.	A_deaminase domain-containing protein.	0.902
LOC103180762	ada2	ENSCMIP00000002769	ENSCMIP00000024951	A_deaminase domain-containing protein.	Adenosine deaminase CECR1.	0.961
LOC103180762	adk	ENSCMIP00000002769	ENSCMIP00000020239	A_deaminase domain-containing protein.	PfkB domain-containing protein.	0.983
LOC103180762	dck	ENSCMIP00000002769	ENSCMIP00000013110	A_deaminase domain-containing protein.	dNK domain-containing protein.	0.924
LOC103180762	hddc2	ENSCMIP00000002769	ENSCMIP00000026833	A_deaminase domain-containing protein.	HD domain-containing protein.	0.938
LOC103180762	lacc1	ENSCMIP00000002769	ENSCMIP00000027402	A_deaminase domain-containing protein.	Uncharacterized protein.	0.914
LOC103180762	nt5e	ENSCMIP00000002769	ENSCMIP00000015555	A_deaminase domain-containing protein.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.860
LOC103180762	pnp	ENSCMIP00000002769	ENSCMIP00000028502	A_deaminase domain-containing protein.	PNP_UDP_1 domain-containing protein.	0.962
LOC103188631	LOC103180762	ENSCMIP00000005674	ENSCMIP00000002769	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	A_deaminase domain-containing protein.	0.962
LOC103188631	LOC103191301	ENSCMIP00000005674	ENSCMIP00000002852	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	dNK domain-containing protein.	0.911
LOC103188631	ada	ENSCMIP00000005674	ENSCMIP00000030339	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	A_deaminase domain-containing protein.	0.962
LOC103188631	ada2	ENSCMIP00000005674	ENSCMIP00000024951	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Adenosine deaminase CECR1.	0.944
LOC103188631	adk	ENSCMIP00000005674	ENSCMIP00000020239	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	PfkB domain-containing protein.	0.964
LOC103188631	dck	ENSCMIP00000005674	ENSCMIP00000013110	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	dNK domain-containing protein.	0.922
LOC103188631	hddc2	ENSCMIP00000005674	ENSCMIP00000026833	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	HD domain-containing protein.	0.951
LOC103188631	lacc1	ENSCMIP00000005674	ENSCMIP00000027402	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.917
LOC103188631	nt5e	ENSCMIP00000005674	ENSCMIP00000015555	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein; Belongs to the 5'-nucleotidase family.	0.949
LOC103188631	pnp	ENSCMIP00000005674	ENSCMIP00000028502	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	PNP_UDP_1 domain-containing protein.	0.902