STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnpepLeuk-A4-hydro_C domain-containing protein. (629 aa)    
Predicted Functional Partners:
pde5a
Phosphodiesterase.
     
 0.750
trit1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.
 
      0.679
suox
Cytochrome b5 heme-binding domain-containing protein.
      
 0.678
aldh18a1
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
     
 0.555
rpl23a
60S ribosomal protein L23a-like protein; Belongs to the universal ribosomal protein uL23 family.
    
 0.510
Rpl19
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
    
 0.500
rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
   
 0.488
rps27a
Ubiquitin-like domain-containing protein.
    
  0.485
rpl36
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
    
  0.484
cndp2
M20_dimer domain-containing protein.
 
 
 0.484
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.