LOC103191300 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103191300

Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family. (624 aa)

Predicted Functional Partners:

atic

0.930

itpa

0.927

rrm1

0.921

ampd2

0.921

ampd3

0.921

rrm2

0.917

LOC103185624

0.917

gmps

0.915

LOC103173731

0.914

adss1

0.914

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103173731	LOC103191300	ENSCMIP00000004095	ENSCMIP00000002841	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	0.914
LOC103173731	adss1	ENSCMIP00000004095	ENSCMIP00000031453	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.902
LOC103173731	ampd2	ENSCMIP00000004095	ENSCMIP00000038152	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	0.930
LOC103173731	ampd3	ENSCMIP00000004095	ENSCMIP00000046519	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	0.930
LOC103173731	atic	ENSCMIP00000004095	ENSCMIP00000041419	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	MGS domain-containing protein.	0.984
LOC103173731	gmps	ENSCMIP00000004095	ENSCMIP00000001285	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	Uncharacterized protein.	0.520
LOC103173731	itpa	ENSCMIP00000004095	ENSCMIP00000045591	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes the non-canonical purine nucleotides inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) as well as 2'-deoxy-N-6-hydroxylaminopurine triposphate (dHAPTP) and xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions; Belongs to the HAM1 NTPase family.	0.944
LOC103185624	LOC103191300	ENSCMIP00000032516	ENSCMIP00000002841	Uncharacterized protein.	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	0.917
LOC103185624	rrm1	ENSCMIP00000032516	ENSCMIP00000003888	Uncharacterized protein.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.998
LOC103185624	rrm2	ENSCMIP00000032516	ENSCMIP00000023590	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC103191300	LOC103173731	ENSCMIP00000002841	ENSCMIP00000004095	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.	0.914
LOC103191300	LOC103185624	ENSCMIP00000002841	ENSCMIP00000032516	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Uncharacterized protein.	0.917
LOC103191300	adss1	ENSCMIP00000002841	ENSCMIP00000031453	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.914
LOC103191300	ampd2	ENSCMIP00000002841	ENSCMIP00000038152	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	0.921
LOC103191300	ampd3	ENSCMIP00000002841	ENSCMIP00000046519	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	0.921
LOC103191300	atic	ENSCMIP00000002841	ENSCMIP00000041419	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	MGS domain-containing protein.	0.930
LOC103191300	gmps	ENSCMIP00000002841	ENSCMIP00000001285	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Uncharacterized protein.	0.915
LOC103191300	itpa	ENSCMIP00000002841	ENSCMIP00000045591	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Inosine triphosphate pyrophosphatase; Pyrophosphatase that hydrolyzes the non-canonical purine nucleotides inosine triphosphate (ITP), deoxyinosine triphosphate (dITP) as well as 2'-deoxy-N-6-hydroxylaminopurine triposphate (dHAPTP) and xanthosine 5'-triphosphate (XTP) to their respective monophosphate derivatives. The enzyme does not distinguish between the deoxy- and ribose forms. Probably excludes non-canonical purines from RNA and DNA precursor pools, thus preventing their incorporation into RNA and DNA and avoiding chromosomal lesions; Belongs to the HAM1 NTPase family.	0.927
LOC103191300	rrm1	ENSCMIP00000002841	ENSCMIP00000003888	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.921
LOC103191300	rrm2	ENSCMIP00000002841	ENSCMIP00000023590	Uncharacterized protein; Belongs to the GDA1/CD39 NTPase family.	Uncharacterized protein.	0.917