ENSCMIP00000002865 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000002865

Uncharacterized protein. (186 aa)

Predicted Functional Partners:

LOC103190656

0.723

wipi2

0.698

wipi1

0.698

ENSCMIP00000035149

0.667

ulk1

0.667

ulk2

0.667

ulk3

0.582

Stk35

0.582

pdik1l

0.582

ENSCMIP00000003629

0.551

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000002865	ENSCMIP00000003629	ENSCMIP00000002865	ENSCMIP00000003629	Uncharacterized protein.	Uncharacterized protein.	0.551
ENSCMIP00000002865	ENSCMIP00000035149	ENSCMIP00000002865	ENSCMIP00000035149	Uncharacterized protein.	Protein kinase domain-containing protein.	0.667
ENSCMIP00000002865	LOC103190656	ENSCMIP00000002865	ENSCMIP00000040636	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.723
ENSCMIP00000002865	Stk35	ENSCMIP00000002865	ENSCMIP00000030565	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.582
ENSCMIP00000002865	pdik1l	ENSCMIP00000002865	ENSCMIP00000045158	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.582
ENSCMIP00000002865	ulk1	ENSCMIP00000002865	ENSCMIP00000035152	Uncharacterized protein.	DUF3543 domain-containing protein.	0.667
ENSCMIP00000002865	ulk2	ENSCMIP00000002865	ENSCMIP00000046939	Uncharacterized protein.	Unc-51-like kinase 2.	0.667
ENSCMIP00000002865	ulk3	ENSCMIP00000002865	ENSCMIP00000015752	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.582
ENSCMIP00000002865	wipi1	ENSCMIP00000002865	ENSCMIP00000046408	Uncharacterized protein.	Uncharacterized protein.	0.698
ENSCMIP00000002865	wipi2	ENSCMIP00000002865	ENSCMIP00000044241	Uncharacterized protein.	Uncharacterized protein.	0.698
ENSCMIP00000003629	ENSCMIP00000002865	ENSCMIP00000003629	ENSCMIP00000002865	Uncharacterized protein.	Uncharacterized protein.	0.551
ENSCMIP00000003629	LOC103190656	ENSCMIP00000003629	ENSCMIP00000040636	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.571
ENSCMIP00000003629	wipi1	ENSCMIP00000003629	ENSCMIP00000046408	Uncharacterized protein.	Uncharacterized protein.	0.480
ENSCMIP00000003629	wipi2	ENSCMIP00000003629	ENSCMIP00000044241	Uncharacterized protein.	Uncharacterized protein.	0.480
ENSCMIP00000035149	ENSCMIP00000002865	ENSCMIP00000035149	ENSCMIP00000002865	Protein kinase domain-containing protein.	Uncharacterized protein.	0.667
ENSCMIP00000035149	LOC103190656	ENSCMIP00000035149	ENSCMIP00000040636	Protein kinase domain-containing protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.854
ENSCMIP00000035149	ulk1	ENSCMIP00000035149	ENSCMIP00000035152	Protein kinase domain-containing protein.	DUF3543 domain-containing protein.	0.900
ENSCMIP00000035149	wipi1	ENSCMIP00000035149	ENSCMIP00000046408	Protein kinase domain-containing protein.	Uncharacterized protein.	0.691
ENSCMIP00000035149	wipi2	ENSCMIP00000035149	ENSCMIP00000044241	Protein kinase domain-containing protein.	Uncharacterized protein.	0.691
LOC103190656	ENSCMIP00000002865	ENSCMIP00000040636	ENSCMIP00000002865	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	Uncharacterized protein.	0.723