STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spata16Uncharacterized protein. (569 aa)    
Predicted Functional Partners:
ccdc62
Uncharacterized protein.
      
 0.645
dpy19l1
Protein dpy-19-like 1-like protein.
      
 0.562
Cabyr
RIIa domain-containing protein.
      
 0.553
spata18
MIEAP domain-containing protein.
      
 0.553
catsperg
Uncharacterized protein.
   
  
 0.489
pick1
AH domain-containing protein.
      
 0.450
ENSCMIP00000046403
Ig-like domain-containing protein.
      
 0.430
ENSCMIP00000007738
RIIa domain-containing protein.
      
 0.410
ENSCMIP00000028032
Rtf2 domain-containing protein.
      
 0.408
rtf2
Rtf2 domain-containing protein.
      
 0.408
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.