Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000003106Uncharacterized protein. (135 aa)    
Predicted Functional Partners:
LOC103173283
Nipped-B protein.
 
  
  0.972
LOC103191409
Uncharacterized protein.
 
  
  0.967
LOC103172845
Uncharacterized protein.
 
  
  0.964
nipbl
Uncharacterized protein.
 
  
  0.962
LOC103171785
Uncharacterized protein.
 
  
  0.961
ENSCMIP00000003103
Uncharacterized protein.
 
   
  0.952
LOC103173180
Uncharacterized protein.
 
   
  0.952
smc3
Structural maintenance of chromosomes protein.
   
 0.808
mau2
TPR_REGION domain-containing protein.
    
 0.778
pds5a
Uncharacterized protein.
   
 0.739
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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