ENSCMIP00000003106 protein (Callorhinchus milii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCMIP00000003106

Uncharacterized protein. (135 aa)

Predicted Functional Partners:

LOC103173283

0.941

LOC103191409

0.931

LOC103172845

0.925

nipbl

0.921

LOC103171785

0.920

ENSCMIP00000003103

0.900

LOC103173180

0.900

smc3

0.829

mau2

0.748

LOC103171617

0.746

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003103	ENSCMIP00000003106	ENSCMIP00000003103	ENSCMIP00000003106	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000003103	LOC103171617	ENSCMIP00000003103	ENSCMIP00000011775	Uncharacterized protein.	Uncharacterized protein.	0.764
ENSCMIP00000003103	LOC103171785	ENSCMIP00000003103	ENSCMIP00000013862	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000003103	LOC103172845	ENSCMIP00000003103	ENSCMIP00000007357	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000003103	LOC103173180	ENSCMIP00000003103	ENSCMIP00000004031	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000003103	LOC103173283	ENSCMIP00000003103	ENSCMIP00000009499	Uncharacterized protein.	Nipped-B protein.	0.900
ENSCMIP00000003103	LOC103191409	ENSCMIP00000003103	ENSCMIP00000007883	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000003103	mau2	ENSCMIP00000003103	ENSCMIP00000009971	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.761
ENSCMIP00000003103	nipbl	ENSCMIP00000003103	ENSCMIP00000031931	Uncharacterized protein.	Uncharacterized protein.	0.923
ENSCMIP00000003103	smc3	ENSCMIP00000003103	ENSCMIP00000046001	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.840
ENSCMIP00000003106	ENSCMIP00000003103	ENSCMIP00000003106	ENSCMIP00000003103	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000003106	LOC103171617	ENSCMIP00000003106	ENSCMIP00000011775	Uncharacterized protein.	Uncharacterized protein.	0.746
ENSCMIP00000003106	LOC103171785	ENSCMIP00000003106	ENSCMIP00000013862	Uncharacterized protein.	Uncharacterized protein.	0.920
ENSCMIP00000003106	LOC103172845	ENSCMIP00000003106	ENSCMIP00000007357	Uncharacterized protein.	Uncharacterized protein.	0.925
ENSCMIP00000003106	LOC103173180	ENSCMIP00000003106	ENSCMIP00000004031	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000003106	LOC103173283	ENSCMIP00000003106	ENSCMIP00000009499	Uncharacterized protein.	Nipped-B protein.	0.941
ENSCMIP00000003106	LOC103191409	ENSCMIP00000003106	ENSCMIP00000007883	Uncharacterized protein.	Uncharacterized protein.	0.931
ENSCMIP00000003106	mau2	ENSCMIP00000003106	ENSCMIP00000009971	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.748
ENSCMIP00000003106	nipbl	ENSCMIP00000003106	ENSCMIP00000031931	Uncharacterized protein.	Uncharacterized protein.	0.921
ENSCMIP00000003106	smc3	ENSCMIP00000003106	ENSCMIP00000046001	Uncharacterized protein.	Structural maintenance of chromosomes protein.	0.829