wdr41 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

wdr41

Uncharacterized protein. (461 aa)

Predicted Functional Partners:

smcr8

0.997

c9orf72

0.995

LOC103179516

0.956

rab8a

0.918

ENSCMIP00000009635

0.900

plk3

0.806

plk1

0.806

plk2

0.806

cdc27

0.792

cks2

0.791

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000009635	LOC103179516	ENSCMIP00000009635	ENSCMIP00000042214	Uncharacterized protein.	Ras-related protein Rab-39B-like protein.	0.900
ENSCMIP00000009635	c9orf72	ENSCMIP00000009635	ENSCMIP00000016417	Uncharacterized protein.	Uncharacterized protein.	0.909
ENSCMIP00000009635	rab8a	ENSCMIP00000009635	ENSCMIP00000025812	Uncharacterized protein.	Uncharacterized protein.	0.900
ENSCMIP00000009635	smcr8	ENSCMIP00000009635	ENSCMIP00000037971	Uncharacterized protein.	UDENN FLCN/SMCR8-type domain-containing protein.	0.904
ENSCMIP00000009635	wdr41	ENSCMIP00000009635	ENSCMIP00000003133	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC103179516	ENSCMIP00000009635	ENSCMIP00000042214	ENSCMIP00000009635	Ras-related protein Rab-39B-like protein.	Uncharacterized protein.	0.900
LOC103179516	c9orf72	ENSCMIP00000042214	ENSCMIP00000016417	Ras-related protein Rab-39B-like protein.	Uncharacterized protein.	0.991
LOC103179516	rab8a	ENSCMIP00000042214	ENSCMIP00000025812	Ras-related protein Rab-39B-like protein.	Uncharacterized protein.	0.906
LOC103179516	smcr8	ENSCMIP00000042214	ENSCMIP00000037971	Ras-related protein Rab-39B-like protein.	UDENN FLCN/SMCR8-type domain-containing protein.	0.964
LOC103179516	wdr41	ENSCMIP00000042214	ENSCMIP00000003133	Ras-related protein Rab-39B-like protein.	Uncharacterized protein.	0.956
c9orf72	ENSCMIP00000009635	ENSCMIP00000016417	ENSCMIP00000009635	Uncharacterized protein.	Uncharacterized protein.	0.909
c9orf72	LOC103179516	ENSCMIP00000016417	ENSCMIP00000042214	Uncharacterized protein.	Ras-related protein Rab-39B-like protein.	0.991
c9orf72	rab8a	ENSCMIP00000016417	ENSCMIP00000025812	Uncharacterized protein.	Uncharacterized protein.	0.920
c9orf72	smcr8	ENSCMIP00000016417	ENSCMIP00000037971	Uncharacterized protein.	UDENN FLCN/SMCR8-type domain-containing protein.	0.999
c9orf72	wdr41	ENSCMIP00000016417	ENSCMIP00000003133	Uncharacterized protein.	Uncharacterized protein.	0.995
cdc27	cks2	ENSCMIP00000001525	ENSCMIP00000026967	Uncharacterized protein.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.460
cdc27	plk1	ENSCMIP00000001525	ENSCMIP00000029453	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.977
cdc27	plk2	ENSCMIP00000001525	ENSCMIP00000047031	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.788
cdc27	plk3	ENSCMIP00000001525	ENSCMIP00000024579	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.788
cdc27	wdr41	ENSCMIP00000001525	ENSCMIP00000003133	Uncharacterized protein.	Uncharacterized protein.	0.792