Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCMIP00000003188Uncharacterized protein. (866 aa)    
Predicted Functional Partners:
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.785
polr2c
RPOLD domain-containing protein.
    
 0.772
LOC103174263
Uncharacterized protein.
    
 0.764
ENSCMIP00000002936
Uncharacterized protein.
    
 0.763
polr2f
Uncharacterized protein.
    
  0.761
polr2e
Uncharacterized protein.
    
  0.761
cep89
Uncharacterized protein.
     
 0.761
cep83
Coiled-coil domain-containing protein 41.
     
 0.758
polr2d
RPOL4c domain-containing protein.
    
  0.750
cep164
WW domain-containing protein.
   
 
 0.739
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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