Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103171972Uncharacterized protein; Belongs to the integrin alpha chain family. (881 aa)    
Predicted Functional Partners:
LOC103171582
Uncharacterized protein.
 
   
  0.951
pxn
Uncharacterized protein.
    
 0.940
itgb4
Integrin beta.
   
 0.939
flnb
Uncharacterized protein.
   
 0.923
LOC103188814
Integrin beta; Belongs to the integrin beta chain family.
   
 0.919
LOC103171689
Integrin beta; Belongs to the integrin beta chain family.
   
 0.815
itgb2
Integrin beta.
   
 0.815
LOC103188813
Integrin beta; Belongs to the integrin beta chain family.
   
 0.815
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.814
vtn
SMB domain-containing protein.
   
 0.812
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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