STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
enkd1Enkurin domain-containing protein. (326 aa)    
Predicted Functional Partners:
ENSCMIP00000003431
XRCC1_N domain-containing protein.
   
 0.815
lig4
DNA ligase.
  
 0.730
rec114
Uncharacterized protein.
    
 0.719
lig3
DNA ligase.
  
 0.703
xrcc6
Uncharacterized protein.
    
 0.657
apex2
DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.
    
 0.647
ENSCMIP00000003165
Uncharacterized protein.
   
 0.632
LOC103173653
Uncharacterized protein.
   
 0.632
gfod2
GFO_IDH_MocA domain-containing protein.
 
 
  
 0.611
xrcc5
Ku domain-containing protein.
     
 0.603
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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