Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lactb2Beta-lactamase-like protein 2. (287 aa)    
Predicted Functional Partners:
ybey
Uncharacterized protein.
  
 
 0.914
pla2g12b
Uncharacterized protein.
      
 0.753
noa1
CP-type G domain-containing protein.
   
  
 0.680
LOC103186851
Lactamase_B domain-containing protein.
   
 
 0.654
rps23
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
      
 0.630
LOC103178745
Uncharacterized protein.
      
 0.627
rnaseh1
Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.619
bhmt
Hcy-binding domain-containing protein; Involved in the regulation of homocysteine metabolism.
  
  
 0.597
ube2h
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
   0.567
pnpt1
S1 motif domain-containing protein.
      
 0.561
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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