Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103186402Uncharacterized protein. (311 aa)    
Predicted Functional Partners:
slc15a4
Solute carrier family 15 member 4.
    
 0.895
Slc15a4
Uncharacterized protein.
    
 0.895
slc15a1
Uncharacterized protein.
    
 0.722
slc15a2
Uncharacterized protein.
    
 0.722
slc15a5
Uncharacterized protein.
    
 0.612
tmem187
Uncharacterized protein.
      
 0.589
ENSCMIP00000002997
Uncharacterized protein.
     
  0.534
LOC103172650
IKBKB_SDD domain-containing protein.
     
  0.534
chuk
Protein kinase domain-containing protein.
     
  0.534
zhx1
Uncharacterized protein.
  
     0.446
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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