Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smdt1Uncharacterized protein. (105 aa)    
Predicted Functional Partners:
micu1
Uncharacterized protein.
    
 0.999
micu2
Uncharacterized protein.
    
 0.994
mcu
Mitochondrial calcium uniporter.
    
 0.984
mcub
MCU domain-containing protein.
    
 0.984
micu3
Uncharacterized protein.
    
 0.980
afg3l2
AAA domain-containing protein.
     
 0.902
atp5f1d
ATP synthase subunit delta, mitochondrial-like protein.
   
    0.893
spg7
AAA domain-containing protein.
     
 0.864
ak2
ADK_lid domain-containing protein; Belongs to the adenylate kinase family.
      
 0.791
edf1
Endothelial differentiation-related factor 1.
   
    0.781
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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