Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl38Uncharacterized protein. (391 aa)    
Predicted Functional Partners:
mrpl58
RF_PROK_I domain-containing protein.
   
 
 0.946
mrpl40
Mitochondrial ribosomal protein L40.
   
 
 0.944
mrpl52
Uncharacterized protein.
   
 
 0.937
mrpl18
Uncharacterized protein.
   
   0.921
mrpl48
Ribosomal_S10 domain-containing protein.
   
 
 0.921
mrpl13
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.894
mrpl16
Ribosomal_L16 domain-containing protein; Belongs to the universal ribosomal protein uL16 family.
   
 
 0.892
ENSCMIP00000025885
Uncharacterized protein.
   
 
 0.888
mrpl4
Uncharacterized protein.
   
 
 0.855
mrpl10
Uncharacterized protein.
   
 
 0.844
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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