ENSCMIP00000003339 protein (Callorhinchus milii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-occurrence

Co-expression

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[Homology]

Score

ENSCMIP00000003339

annotation not available (352 aa)

Predicted Functional Partners:

ENSCMIP00000007198

0.901

rsu1

0.830

lims2

0.664

lims1

0.664

ENSCMIP00000029276

0.487

pxn

0.487

fermt2

0.486

fermt1

0.486

pdlim7

0.461

pdlim4

0.461

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003339	ENSCMIP00000007198	ENSCMIP00000003339	ENSCMIP00000007198	annotation not available	Uncharacterized protein.	0.901
ENSCMIP00000003339	ENSCMIP00000029276	ENSCMIP00000003339	ENSCMIP00000029276	annotation not available	Uncharacterized protein.	0.487
ENSCMIP00000003339	fermt1	ENSCMIP00000003339	ENSCMIP00000044055	annotation not available	PH domain-containing protein.	0.486
ENSCMIP00000003339	fermt2	ENSCMIP00000003339	ENSCMIP00000025020	annotation not available	PH domain-containing protein.	0.486
ENSCMIP00000003339	lims1	ENSCMIP00000003339	ENSCMIP00000038110	annotation not available	LIM domain-containing protein.	0.664
ENSCMIP00000003339	lims2	ENSCMIP00000003339	ENSCMIP00000031542	annotation not available	LIM domain-containing protein.	0.664
ENSCMIP00000003339	pdlim4	ENSCMIP00000003339	ENSCMIP00000008011	annotation not available	Uncharacterized protein.	0.461
ENSCMIP00000003339	pdlim7	ENSCMIP00000003339	ENSCMIP00000001212	annotation not available	Uncharacterized protein.	0.461
ENSCMIP00000003339	pxn	ENSCMIP00000003339	ENSCMIP00000029284	annotation not available	Uncharacterized protein.	0.487
ENSCMIP00000003339	rsu1	ENSCMIP00000003339	ENSCMIP00000040382	annotation not available	Uncharacterized protein.	0.830
ENSCMIP00000007198	ENSCMIP00000003339	ENSCMIP00000007198	ENSCMIP00000003339	Uncharacterized protein.	annotation not available	0.901
ENSCMIP00000007198	ENSCMIP00000029276	ENSCMIP00000007198	ENSCMIP00000029276	Uncharacterized protein.	Uncharacterized protein.	0.860
ENSCMIP00000007198	fermt1	ENSCMIP00000007198	ENSCMIP00000044055	Uncharacterized protein.	PH domain-containing protein.	0.903
ENSCMIP00000007198	fermt2	ENSCMIP00000007198	ENSCMIP00000025020	Uncharacterized protein.	PH domain-containing protein.	0.903
ENSCMIP00000007198	lims1	ENSCMIP00000007198	ENSCMIP00000038110	Uncharacterized protein.	LIM domain-containing protein.	0.960
ENSCMIP00000007198	lims2	ENSCMIP00000007198	ENSCMIP00000031542	Uncharacterized protein.	LIM domain-containing protein.	0.960
ENSCMIP00000007198	pdlim4	ENSCMIP00000007198	ENSCMIP00000008011	Uncharacterized protein.	Uncharacterized protein.	0.505
ENSCMIP00000007198	pdlim7	ENSCMIP00000007198	ENSCMIP00000001212	Uncharacterized protein.	Uncharacterized protein.	0.521
ENSCMIP00000007198	pxn	ENSCMIP00000007198	ENSCMIP00000029284	Uncharacterized protein.	Uncharacterized protein.	0.860
ENSCMIP00000007198	rsu1	ENSCMIP00000007198	ENSCMIP00000040382	Uncharacterized protein.	Uncharacterized protein.	0.988