LOC103180782 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103180782

ANK_REP_REGION domain-containing protein. (304 aa)

Predicted Functional Partners:

commd5

0.817

LOC103190184

0.700

impdh2

0.700

fbxo11

0.686

ibtk

0.677

dnajc17

0.674

kctd9

0.662

eloc

0.650

kcmf1

0.649

susd6

0.603

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103180782	LOC103190184	ENSCMIP00000003346	ENSCMIP00000009807	ANK_REP_REGION domain-containing protein.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.	0.700
LOC103180782	commd5	ENSCMIP00000003346	ENSCMIP00000030111	ANK_REP_REGION domain-containing protein.	COMM domain-containing protein 5.	0.817
LOC103180782	dnajc17	ENSCMIP00000003346	ENSCMIP00000037893	ANK_REP_REGION domain-containing protein.	J domain-containing protein.	0.674
LOC103180782	eloc	ENSCMIP00000003346	ENSCMIP00000004246	ANK_REP_REGION domain-containing protein.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.650
LOC103180782	fbxo11	ENSCMIP00000003346	ENSCMIP00000006775	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.686
LOC103180782	ibtk	ENSCMIP00000003346	ENSCMIP00000028869	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.677
LOC103180782	impdh2	ENSCMIP00000003346	ENSCMIP00000048989	ANK_REP_REGION domain-containing protein.	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.	0.700
LOC103180782	kcmf1	ENSCMIP00000003346	ENSCMIP00000015658	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.649
LOC103180782	kctd9	ENSCMIP00000003346	ENSCMIP00000012671	ANK_REP_REGION domain-containing protein.	KHA domain-containing protein.	0.662
LOC103180782	susd6	ENSCMIP00000003346	ENSCMIP00000043736	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.603
LOC103190184	LOC103180782	ENSCMIP00000009807	ENSCMIP00000003346	Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.	ANK_REP_REGION domain-containing protein.	0.700
commd5	LOC103180782	ENSCMIP00000030111	ENSCMIP00000003346	COMM domain-containing protein 5.	ANK_REP_REGION domain-containing protein.	0.817
commd5	eloc	ENSCMIP00000030111	ENSCMIP00000004246	COMM domain-containing protein 5.	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	0.703
commd5	fbxo11	ENSCMIP00000030111	ENSCMIP00000006775	COMM domain-containing protein 5.	Uncharacterized protein.	0.770
commd5	kcmf1	ENSCMIP00000030111	ENSCMIP00000015658	COMM domain-containing protein 5.	Uncharacterized protein.	0.586
dnajc17	LOC103180782	ENSCMIP00000037893	ENSCMIP00000003346	J domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.674
dnajc17	ibtk	ENSCMIP00000037893	ENSCMIP00000028869	J domain-containing protein.	Uncharacterized protein.	0.919
eloc	LOC103180782	ENSCMIP00000004246	ENSCMIP00000003346	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	ANK_REP_REGION domain-containing protein.	0.650
eloc	commd5	ENSCMIP00000004246	ENSCMIP00000030111	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	COMM domain-containing protein 5.	0.703
eloc	fbxo11	ENSCMIP00000004246	ENSCMIP00000006775	Skp1_POZ domain-containing protein; Belongs to the SKP1 family.	Uncharacterized protein.	0.459