LOC103191312 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103191312

Uncharacterized protein. (205 aa)

Predicted Functional Partners:

vtn

0.824

pgap1

0.614

gtpbp8

0.604

selenbp1

0.569

vma21

0.540

micos13

0.464

Habp2

0.445

ENSCMIP00000024351

0.445

mmp9

0.414

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000024351	LOC103191312	ENSCMIP00000024351	ENSCMIP00000003398	Uncharacterized protein.	Uncharacterized protein.	0.445
Habp2	LOC103191312	ENSCMIP00000024312	ENSCMIP00000003398	Uncharacterized protein.	Uncharacterized protein.	0.445
LOC103191312	ENSCMIP00000024351	ENSCMIP00000003398	ENSCMIP00000024351	Uncharacterized protein.	Uncharacterized protein.	0.445
LOC103191312	Habp2	ENSCMIP00000003398	ENSCMIP00000024312	Uncharacterized protein.	Uncharacterized protein.	0.445
LOC103191312	gtpbp8	ENSCMIP00000003398	ENSCMIP00000026328	Uncharacterized protein.	EngB-type G domain-containing protein.	0.604
LOC103191312	micos13	ENSCMIP00000003398	ENSCMIP00000006790	Uncharacterized protein.	MICOS complex subunit MIC13; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.464
LOC103191312	mmp9	ENSCMIP00000003398	ENSCMIP00000033971	Uncharacterized protein.	Uncharacterized protein.	0.414
LOC103191312	pgap1	ENSCMIP00000003398	ENSCMIP00000037957	Uncharacterized protein.	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.	0.614
LOC103191312	selenbp1	ENSCMIP00000003398	ENSCMIP00000007184	Uncharacterized protein.	Uncharacterized protein.	0.569
LOC103191312	vma21	ENSCMIP00000003398	ENSCMIP00000030888	Uncharacterized protein.	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family.	0.540
LOC103191312	vtn	ENSCMIP00000003398	ENSCMIP00000031322	Uncharacterized protein.	SMB domain-containing protein.	0.824
gtpbp8	LOC103191312	ENSCMIP00000026328	ENSCMIP00000003398	EngB-type G domain-containing protein.	Uncharacterized protein.	0.604
micos13	LOC103191312	ENSCMIP00000006790	ENSCMIP00000003398	MICOS complex subunit MIC13; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Uncharacterized protein.	0.464
mmp9	LOC103191312	ENSCMIP00000033971	ENSCMIP00000003398	Uncharacterized protein.	Uncharacterized protein.	0.414
pgap1	LOC103191312	ENSCMIP00000037957	ENSCMIP00000003398	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.	Uncharacterized protein.	0.614
selenbp1	LOC103191312	ENSCMIP00000007184	ENSCMIP00000003398	Uncharacterized protein.	Uncharacterized protein.	0.569
selenbp1	vma21	ENSCMIP00000007184	ENSCMIP00000030888	Uncharacterized protein.	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family.	0.653
vma21	LOC103191312	ENSCMIP00000030888	ENSCMIP00000003398	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family.	Uncharacterized protein.	0.540
vma21	selenbp1	ENSCMIP00000030888	ENSCMIP00000007184	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family.	Uncharacterized protein.	0.653
vtn	LOC103191312	ENSCMIP00000031322	ENSCMIP00000003398	SMB domain-containing protein.	Uncharacterized protein.	0.824