LOC103173025 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103173025

Cathepsin L1-like protein; Belongs to the peptidase C1 family. (335 aa)

Predicted Functional Partners:

ctsb

0.533

ENSCMIP00000001218

0.466

ctso

0.434

psap

0.424

LOC103185998

0.420

LOC103185999

0.420

ENSCMIP00000017463

0.420

LOC103186000

0.420

ENSCMIP00000017500

0.420

ENSCMIP00000023601

0.420

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000001218	ENSCMIP00000017463	ENSCMIP00000001218	ENSCMIP00000017463	Propeptide_C1 domain-containing protein.	Uncharacterized protein.	0.564
ENSCMIP00000001218	ENSCMIP00000017500	ENSCMIP00000001218	ENSCMIP00000017500	Propeptide_C1 domain-containing protein.	Uncharacterized protein.	0.564
ENSCMIP00000001218	ENSCMIP00000023601	ENSCMIP00000001218	ENSCMIP00000023601	Propeptide_C1 domain-containing protein.	Uncharacterized protein.	0.564
ENSCMIP00000001218	LOC103173025	ENSCMIP00000001218	ENSCMIP00000003402	Propeptide_C1 domain-containing protein.	Cathepsin L1-like protein; Belongs to the peptidase C1 family.	0.466
ENSCMIP00000001218	LOC103185998	ENSCMIP00000001218	ENSCMIP00000017457	Propeptide_C1 domain-containing protein.	Interferon induced transmembrane protein 3.	0.564
ENSCMIP00000001218	LOC103185999	ENSCMIP00000001218	ENSCMIP00000017460	Propeptide_C1 domain-containing protein.	Interferon-induced transmembrane protein 1-like protein.	0.564
ENSCMIP00000001218	LOC103186000	ENSCMIP00000001218	ENSCMIP00000017495	Propeptide_C1 domain-containing protein.	Interferon induced transmembrane protein.	0.564
ENSCMIP00000001218	psap	ENSCMIP00000001218	ENSCMIP00000006621	Propeptide_C1 domain-containing protein.	Uncharacterized protein.	0.568
ENSCMIP00000017463	ENSCMIP00000001218	ENSCMIP00000017463	ENSCMIP00000001218	Uncharacterized protein.	Propeptide_C1 domain-containing protein.	0.564
ENSCMIP00000017463	LOC103173025	ENSCMIP00000017463	ENSCMIP00000003402	Uncharacterized protein.	Cathepsin L1-like protein; Belongs to the peptidase C1 family.	0.420
ENSCMIP00000017463	ctsb	ENSCMIP00000017463	ENSCMIP00000000068	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.564
ENSCMIP00000017463	ctso	ENSCMIP00000017463	ENSCMIP00000023081	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.457
ENSCMIP00000017463	psap	ENSCMIP00000017463	ENSCMIP00000006621	Uncharacterized protein.	Uncharacterized protein.	0.426
ENSCMIP00000017500	ENSCMIP00000001218	ENSCMIP00000017500	ENSCMIP00000001218	Uncharacterized protein.	Propeptide_C1 domain-containing protein.	0.564
ENSCMIP00000017500	LOC103173025	ENSCMIP00000017500	ENSCMIP00000003402	Uncharacterized protein.	Cathepsin L1-like protein; Belongs to the peptidase C1 family.	0.420
ENSCMIP00000017500	ctsb	ENSCMIP00000017500	ENSCMIP00000000068	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.564
ENSCMIP00000017500	ctso	ENSCMIP00000017500	ENSCMIP00000023081	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.457
ENSCMIP00000017500	psap	ENSCMIP00000017500	ENSCMIP00000006621	Uncharacterized protein.	Uncharacterized protein.	0.426
ENSCMIP00000023601	ENSCMIP00000001218	ENSCMIP00000023601	ENSCMIP00000001218	Uncharacterized protein.	Propeptide_C1 domain-containing protein.	0.564
ENSCMIP00000023601	LOC103173025	ENSCMIP00000023601	ENSCMIP00000003402	Uncharacterized protein.	Cathepsin L1-like protein; Belongs to the peptidase C1 family.	0.420