LOC103173640 protein (Callorhinchus milii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC103173640

Uncharacterized protein. (98 aa)

Predicted Functional Partners:

LOC103173831

0.742

LOC103173162

0.742

klc1

0.742

klc4

0.742

fez2

0.668

LOC103172643

0.660

LOC103172520

0.660

ENSCMIP00000010652

0.660

nphp3

0.620

trak1

0.606

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000010652	LOC103173640	ENSCMIP00000010652	ENSCMIP00000003407	Uncharacterized protein.	Uncharacterized protein.	0.660
ENSCMIP00000010652	trak1	ENSCMIP00000010652	ENSCMIP00000012352	Uncharacterized protein.	Uncharacterized protein.	0.440
LOC103172520	LOC103173640	ENSCMIP00000009703	ENSCMIP00000003407	Uncharacterized protein.	Uncharacterized protein.	0.660
LOC103172520	trak1	ENSCMIP00000009703	ENSCMIP00000012352	Uncharacterized protein.	Uncharacterized protein.	0.440
LOC103172643	LOC103173640	ENSCMIP00000005243	ENSCMIP00000003407	Uncharacterized protein.	Uncharacterized protein.	0.660
LOC103172643	trak1	ENSCMIP00000005243	ENSCMIP00000012352	Uncharacterized protein.	Uncharacterized protein.	0.440
LOC103173162	LOC103173640	ENSCMIP00000009058	ENSCMIP00000003407	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.742
LOC103173162	LOC103173831	ENSCMIP00000009058	ENSCMIP00000004625	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.941
LOC103173162	klc1	ENSCMIP00000009058	ENSCMIP00000032064	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.412
LOC103173162	klc4	ENSCMIP00000009058	ENSCMIP00000044261	TPR_REGION domain-containing protein.	Kinesin light chain 4.	0.411
LOC103173162	trak1	ENSCMIP00000009058	ENSCMIP00000012352	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.406
LOC103173640	ENSCMIP00000010652	ENSCMIP00000003407	ENSCMIP00000010652	Uncharacterized protein.	Uncharacterized protein.	0.660
LOC103173640	LOC103172520	ENSCMIP00000003407	ENSCMIP00000009703	Uncharacterized protein.	Uncharacterized protein.	0.660
LOC103173640	LOC103172643	ENSCMIP00000003407	ENSCMIP00000005243	Uncharacterized protein.	Uncharacterized protein.	0.660
LOC103173640	LOC103173162	ENSCMIP00000003407	ENSCMIP00000009058	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.742
LOC103173640	LOC103173831	ENSCMIP00000003407	ENSCMIP00000004625	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.742
LOC103173640	fez2	ENSCMIP00000003407	ENSCMIP00000047334	Uncharacterized protein.	Uncharacterized protein.	0.668
LOC103173640	klc1	ENSCMIP00000003407	ENSCMIP00000032064	Uncharacterized protein.	Uncharacterized protein.	0.742
LOC103173640	klc4	ENSCMIP00000003407	ENSCMIP00000044261	Uncharacterized protein.	Kinesin light chain 4.	0.742
LOC103173640	nphp3	ENSCMIP00000003407	ENSCMIP00000011474	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.620