gdap2 protein (Callorhinchus milii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

gdap2

Uncharacterized protein. (497 aa)

Predicted Functional Partners:

wdr3

0.806

ptgfrn

0.676

ENSCMIP00000003864

0.669

LOC103183694

0.638

vps35

0.637

Nhlh1

0.628

LOC103181459

0.622

parp10

0.608

Macrod2

0.604

LOC103177453

0.595

Your Current Organism:

Callorhinchus milii

NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCMIP00000003864	gdap2	ENSCMIP00000003864	ENSCMIP00000003425	Uncharacterized protein.	Uncharacterized protein.	0.669
ENSCMIP00000003864	wdr3	ENSCMIP00000003864	ENSCMIP00000003535	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.589
LOC103177453	gdap2	ENSCMIP00000020330	ENSCMIP00000003425	Uncharacterized protein.	Uncharacterized protein.	0.595
LOC103181459	Macrod2	ENSCMIP00000007471	ENSCMIP00000049090	H2A histone family, member Y2; Belongs to the histone H2A family.	Macro domain-containing protein.	0.562
LOC103181459	gdap2	ENSCMIP00000007471	ENSCMIP00000003425	H2A histone family, member Y2; Belongs to the histone H2A family.	Uncharacterized protein.	0.622
LOC103183694	Macrod2	ENSCMIP00000012775	ENSCMIP00000049090	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	Macro domain-containing protein.	0.569
LOC103183694	gdap2	ENSCMIP00000012775	ENSCMIP00000003425	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	Uncharacterized protein.	0.638
Macrod2	LOC103181459	ENSCMIP00000049090	ENSCMIP00000007471	Macro domain-containing protein.	H2A histone family, member Y2; Belongs to the histone H2A family.	0.562
Macrod2	LOC103183694	ENSCMIP00000049090	ENSCMIP00000012775	Macro domain-containing protein.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.569
Macrod2	gdap2	ENSCMIP00000049090	ENSCMIP00000003425	Macro domain-containing protein.	Uncharacterized protein.	0.604
Nhlh1	gdap2	ENSCMIP00000011901	ENSCMIP00000003425	BHLH domain-containing protein.	Uncharacterized protein.	0.628
Nhlh1	ptgfrn	ENSCMIP00000011901	ENSCMIP00000002053	BHLH domain-containing protein.	Uncharacterized protein.	0.484
Nhlh1	wdr3	ENSCMIP00000011901	ENSCMIP00000003535	BHLH domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.470
gdap2	ENSCMIP00000003864	ENSCMIP00000003425	ENSCMIP00000003864	Uncharacterized protein.	Uncharacterized protein.	0.669
gdap2	LOC103177453	ENSCMIP00000003425	ENSCMIP00000020330	Uncharacterized protein.	Uncharacterized protein.	0.595
gdap2	LOC103181459	ENSCMIP00000003425	ENSCMIP00000007471	Uncharacterized protein.	H2A histone family, member Y2; Belongs to the histone H2A family.	0.622
gdap2	LOC103183694	ENSCMIP00000003425	ENSCMIP00000012775	Uncharacterized protein.	Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.	0.638
gdap2	Macrod2	ENSCMIP00000003425	ENSCMIP00000049090	Uncharacterized protein.	Macro domain-containing protein.	0.604
gdap2	Nhlh1	ENSCMIP00000003425	ENSCMIP00000011901	Uncharacterized protein.	BHLH domain-containing protein.	0.628
gdap2	parp10	ENSCMIP00000003425	ENSCMIP00000000260	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.608