Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ENSCMIP00000003450DDE Tnp4 domain-containing protein. (327 aa)    
Predicted Functional Partners:
prorp
PRORP domain-containing protein.
      
 0.750
ENSCMIP00000026159
HTH CENPB-type domain-containing protein.
      
 0.692
ENSCMIP00000034774
Integrase catalytic domain-containing protein.
      
 0.690
pgbd5
Uncharacterized protein.
      
 0.676
shpk
FGGY_N domain-containing protein.
      
 0.672
LOC103181797
Mannosyltransferase.
      
 0.624
qrich1
Glutamine-rich protein 1-like protein.
      
 0.614
ENSCMIP00000034619
Uncharacterized protein.
      
 0.600
ENSCMIP00000034626
HTH CENPB-type domain-containing protein.
      
 0.600
chpt1
Uncharacterized protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
      
 0.555
Your Current Organism:
Callorhinchus milii
NCBI taxonomy Id: 7868
Other names: Australian ghost shark, C. milii, elephant fish, elephant shark, ghost shark, makorepe, plownose chimaera, reperepe
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